1. Human Immunodeficiency virus
• Biology of HIV
• Determining mutational vulneribilities of HIV
• Inference of prevalence and fitness landscapes of HIV proteins
• The Selective Cluster Expansion (SCE) Method
• Connection between prevalence and fitness of HIV strains
• Tests against in vitro measurements and clinical data

(Updated Chakraborty Notes and Associated figures)

[These notes will be updated later in the week]