Chakraborty LabMIT  
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    Publications 2003 - 2005

86. “Low TCR Expression Contributes to Dynamic Multifocal Synapses in Thymocytes”, with S.J. Lee, Yuko Hori, Proc. Natl. Acad. Sci., 100, 4383 (2003).

87. “Biasing a Transition State Search for Complex Reactions”, with B. Peters et al., J. Chem. Phys., 118, 9533 (2003).

88. “Decoding Communications Between Cells in the Immune System Using Principles of Chemical Engineering”, AIChE J. , 49, 1614 (2003).

89. “In Silico Models in Molecular and Cellular Immunology: Successes, Promises, and Challenges”, with A.S. Shaw and M.L. Dustin, Nature Immunology, 4, 933 (2003).

90. “Macromolecules at Surfaces: Research Challenges and Opportunities from Tribology to Biology”, with S. Granick et al., J. Polym. Sci. Part B: Polym. Phys., 41, 2755 (2003).

91. “The Immunological Synapse Balances T Cell Receptor Signaling and Degradation”, with K.H. Lee, et al., Science, 302, 1218 (2003).

92. “An Effective Membrane Model for the Immunological Synapse”, with S. Raychaudhuri, M. Kardar, Phys. Rev. Lett., 92, 208101 (2003).

93. “Density Functional Theory Study of Benzene Oxidation over Fe-ZSM-5”, with J. Ryder et al., J. Catalysis, 220, 84 (2003).

94. “Atomistic Simulation of Kinetic Pathways for DNA Unbinding and Hybridization”, with M. Hagan et al., Proc. Natl. Acad. Sci., 100, 13922 (2003).

95. “Hybridization Dynamics of Surface Immobilized DNA”, with M. Hagan, J. Chem. Phys., 120, 4958 (2004).

96. “A Growing String Method for Determining Transition States: Comparison to the Nudged Elastic Band and String Methods”, with B. Peters et al., J. Chem. Phys., 120, 7877 (2004).

97. “CD4 Coordinates Lck Accumulation in the Immunological Synapse: Implications for the Sensitivity of T Cells to Antigen”, with Q. Li et al., Nature Immunol., 5, 791 (2004).

98. “Rate Constants from the Reaction Path Hamiltonian I: Reactive Flux Simulations for Dynamically Corrected Rates”, with B. Peters and A.T. Bell, J. Chem. Phys., 121, 4453 (2004).

99. “Rate Constants from the Reaction Path Hamiltonian II: Nonseparable Semi-classical Transition State Theory”, with B. Peters and A.T. Bell, J. Chem. Phys., 121, 4461 (2004).

100. “Signatures of the Order-Disorder Transition in Copolymers with Quenched Sequence Disorder”, with H.B. Eitouni et al., Macromolecules., 37, 8487 (2004).

101. “Order-Disorder Transitions in Crosslinked Block Copolymer Solids”, with H.Han et al., Macromolecules, 38, 1277 (2005).

102. “Movies, Measurements, and Modeling – the 3M’s of Mechanistic Immunology”, with C. Witt, S. Raychaudhuri, J. Exp. Med., 201, 501 (2005).

103. “A Dendronized Polymer is a Single Molecule Glass”, with J. Das et al., J. Phys. Chem. 109, 6535 (2005).

104. “Directed Migration of Positively Selected Thymocytes Visualized in Real Time”, with C. Witt et al., PLOS Biology, 3 (6), June (2005).

105. “Phase Segregation on Different Length Scales in a Model Cell Membrane System”, with J. Liu, S.Y. Qi, J. Phys. Chem. B, 109, 19960 (2005).
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    Massachusetts Institute of Technology - 2015