Chakraborty LabMIT  
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    Publications 2006 - 2008

106. “Chemomechanics of Surface Stresses Induced by DNA Hybridization”, with J. Stachowiak et al., Langmuir, 22, 263 (2006).

107. “Effects of Quenched and Annealed Macromolecular Crowding on Signal Transduction in T Lymphocytes”, with J. Eide, J. Phys. Chem. B, 110, 2318 (2006).

108. “Molecular Flexibility Influences the Stimulatory Ability of Receptor-Ligand Interactions at Cell-Cell Junctions”, with Mark M. Davis et al., Proc. Natl. Acad. Sci., 103, 4416 (2006).

109. “Simple Models for How Proteins Convert Chemical Energy to Mechanical Work”, with J. Eide, G.F. Oster, BioPhys. J., 90, 4281 (2006).

110. “Kinetic Pathways of Phase Transitions in Model Lipid Rafts”, with J. Liu, J.T. Groves, J. Phys. Chem. B, 110, 8416 (2006).

111. “Advances in Methods and Algorithms for a Modern Quantum Chemistry Program Package”, with Y. Shao et al., Phys. Chem. Chem. Phys., 8, 3172 (2006).

112. “Effect of Cross-linking on the Structure and Thermodynamics of Lamellar Block Copolymers”, with J. Das et al., Macromolecules, 39, 4848 (2006).

113. “A Hybrid Deterministic-Stochastic Algorithm for Modeling Cell Signaling Dynamics in Spatially Inhomogenous Environments and Under the Influence of External Fields” with D. Wylie et al., J. Phys. Chem. B, 110, 12749 (2006).

114. "Sensitivity of T cells to Antigen and Antagonism Emerge from the same Molecular Signaling Module", with D. Wylie et al., Proc. Natl. Acad. Sci., 104, 5533 (2007).

115. “The stimulatory potency of T cell antigens is influenced by the formation of the immunological synapse”, with S. Cemarski et al., Immunity, 26, 345 (2007).

116. “Empty class II major histocompatibility complex created by peptide photolysis establishes the role of DM in peptide association”, J. Biol. Chemistry, 282, 21425 (2007).

117. “Scaffold Proteins Confer Diverse Regulatory Functions to Signaling Cascades”, with J. Locasale et al., Proc. Natl. Acad. Sci., 104, 13307 (2007).

118. “Purely Stochastic Binary Cellular Decisions Without Deterministic Instabilities”, with M. Artomov, J. Das, M. Kardar, Proc. Natl. Acad. Sci., 104, 18958 (2007).

119. "T cell sensing of antigen dose governs interactive behavior with dendritic cells and sets a threshold for T cell activation", with Henrickson, Nature Immunology, 9, 282 (2008).

120. "Tug of war at the exit door", with Dustin, Immunity, 28, 15-17 (2008).

121. "Regulation of signal duration and the statistical dynamics of kinase activation by scaffold proteins", with Locasale, PLOS Computational Biology, 4 (2008).

122. "How antigen quantity and quality determine T-cell decisions in lymphoid tissue", with Zheng et al, Mol. & Cell. Biol., 28, 4040 (2008).

123. "The balance between T cell receptor signaling and degradation at the center of the immunological synapse is determined by antigen quality", with Cemerski et al, Immunity, 29, 414 (2008).

124. "How the thymus designs antigen-specific and self-tolerant T cell receptor sequences", with Kosmrlj et al, Proc. Natl. Acad. Sci., 105, 16671 (2008).
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    Massachusetts Institute of Technology - 2015