R : Copyright 2005, The R Foundation for Statistical Computing Version 2.1.0 Patched (2005-05-12), ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for a HTML browser interface to help. Type 'q()' to quit R. > source("http://www.bioconductor.org/getBioC.R") > getBioC() Running getBioC version 0.2 with R version 2.1.0 http://www.bioconductor.org/scripts/2.1/biocinstall.R Running biocinstall version 0.9 with R version 2.1.0 Warning message: cannot open: HTTP status was '404 Not Found' Warning: unable to access index for repository http://www.bioconductor.org/packages/bioc/stable/bin/macosx/2.1 Warning message: cannot open: HTTP status was '404 Not Found' Warning: unable to access index for repository http://www.bioconductor.org/packages/bioc/stable/bin/macosx/2.1 Warning message: cannot open: HTTP status was '404 Not Found' Warning: unable to access index for repository http://www.bioconductor.org/packages/data/annotation/stable/bin/macosx/2.1 Warning message: cannot open: HTTP status was '404 Not Found' Warning: unable to access index for repository http://www.bioconductor.org/packages/data/experiment/stable/bin/macosx/2.1 Warning message: cannot open: HTTP status was '404 Not Found' Warning: unable to access index for repository http://www.bioconductor.org/packages/omegahat/stable/bin/macosx/2.1 Warning message: cannot open: HTTP status was '404 Not Found' Warning: unable to access index for repository http://www.bioconductor.org/packages/lindsey/stable/bin/macosx/2.1 dependencies ledependencies bledependencies bledependencies bledependencies abledependencies abledependencies ailabledependencies ilabledependencies ledependencies dependencies bledependencies ailabledependencies vailabledependencies t availabledependencies availabledependencies not availabledependencies are not availabledependencies not availabledependencies e not availabledependencies are not availabledependencies not availabledependencies are not available dependency t available trying URL 'http://cran.fhcrc.org/bin/macosx/2.1/limma_1.9.3.tgz' Content type 'application/x-gzip' length 937211 bytes opened URL ================================================== downloaded 915Kb trying URL 'http://cran.fhcrc.org/bin/macosx/2.1/pamr_1.25.tgz' Content type 'application/x-gzip' length 1272062 bytes opened URL ================================================== downloaded 1242Kb trying URL 'http://cran.fhcrc.org/bin/macosx/2.1/sma_0.5.14.tgz' Content type 'application/x-gzip' length 3178159 bytes opened URL ================================================== downloaded 3103Kb trying URL 'http://cran.fhcrc.org/bin/macosx/2.1/statmod_1.1.0.tgz' Content type 'application/x-gzip' length 79247 bytes opened URL ================================================== downloaded 77Kb trying URL 'http://cran.fhcrc.org/bin/macosx/2.1/xtable_1.2-5.tgz' Content type 'application/x-gzip' length 24739 bytes opened URL ================================================== downloaded 24Kb The downloaded packages are in /tmp/RtmpRxryf1/downloaded_packages Warning message: cannot create HTML package index in: make.packages.html() >