To run the program yourself:

The main program to run the learning algorithm is "IntegrityMonitor.m" in the \genetic folder.

To generate a set of validation data or initializing data, use "IntegrityMonitor.m" in the \test folder.

The analysis was done using the command line.

Most of the evolution parameters are in \genetic\Globals.m along with most of the simulation parameters.  The set of P values is called "LS".  The details that aren't in Globals can be found in "mateMutate.m", "mate.m" and "mutate.m" and "score.m".

All of the other files are associated with the simulation framework.  You shouldn't have to play with them.  If you wish to change the simulation parameters in "Globals"