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Glyco-gene Chip Data

The following SC-approved experiments involving Glyco-gene Chip analysis of investigator-supplied RNA samples have been performed by Core E. The Results column provides links to the data which download to your computer when clicked. For murine samples the spreadsheet contains the entire annotated murine gene list and for human samples it contains the entire annotated human gene list. For each RNA sample analyzed, the spreadsheet gives the signals, present/absent calls, and p-values for each gene. The entire annotated human and murine Gene List including glycan-binding proteins and glycosyltransferase genes can be accessed by clicking on: Gene List. In one case, data is also available using the commercial MOE430A and B chips.

Investigator	Experiment Title	Tissue/Cell Line	Results
Core E-generated	Mouse wild type tissue survey	Murine wild type tissues	Spreadsheet Dendrogram
Linda Baum	Gene expression during the development of T-cell memory	Murine CD8⁺ T cells	Spreadsheet
Oscar Campetella	Glyco-gene expression in thymic epithelial cells from male and female mice	Murine thymic epithelial cells	Spreadsheet
Oscar Campetella	Glyco-gene expression in normal vs. testosterone treated thymic epithelial cells from male mice	Murine thymic epithelial cells	Spreadsheet
Henrik Clausen	Gene expression in pancreatic tumor cell lines of differing metastatic potential	Murine pancreatic tumor cell lines	Spreadsheet
Henrik Clausen	Regulation of expression of ppGalNAc-T isoforms and mucin type O-glycosylation in human lung	Human lung tissue	Spreadsheet
Jeff Esko	Expression of glycosyltransferases, sulfotransferases and proteoglycan core proteins in teratocarcinoma cells	Murine F9 teratocarcinoma cells	Spreadsheet
Jeff Esko	Expression patterns of fucosyltransferases and sialyltransferass in leukemic and carcinoma cells	Human LS180 and U937 cells	Spreadsheet
Jeff Friedman	Expression of proteoglycans involved in oxidative stress	Murine red cell progenitors	Spreadsheet
Stephen Jameson	Expression of glycosylation enzymes and substrates during murine CD8⁺ T-cell development	Murine CD8⁺4⁺ thymocytes and CD8⁺ T cells	Spreadsheet
Geoffrey Kansas	Gene expression in murine IgG plasma cells vs. murine B cells	Murine plasma IgG cells and B cells	Spreadsheet
Stephan Ladisch	The effect of retinoic acid on the mRNA levels of ganglioside glycosyltransferases in neuroblastoma cells in vitro	Human LAN-5 neuroblastoma cells	Spreadsheet
Mark Lehrman	Endoplasmic reticulum (ER) stress and the unfolded protein response (UPR)	Human adult dermal fibroblasts	Spreadsheet
Noorjahan Panjwani	Gene expression in corneal epithelial cells of normal and healing mouse corneas	Murine cornea	Spreadsheet
Noorjahan Panjwani	Gene expression in corneal epithelial cells of normal and healing mouse corneas from Galectin-3+/+ and Galectin-3-/- mice	Murine cornea	Spreadsheet
James Paulson	Glyco-gene expression in B cells and CD4+ and CD8+ T cells following activation	Murine lymphocytes	Spreadsheet
Thomas Scanlin	Gene expression of immortalized cystic fibrosis and non-cystic fibrosis airway epithelial cells	Human airway epithelial cell lines	Spreadsheet
Gerald Schwarting	Glyco-gene expression in a mutant mouse that up-regulates the expression of lactosamine-containing glycans in a subset of olfactory neurons	Murine olfactory neurons	Spreadsheet
Frances Smith	Glycosyltransferase gene expression in the developing mouse cerebellum	Murine adult and postnatal day 7 pup brains	Spreadsheet
Pamela Stanley	Glyco-gene expression in wild type and Mgat3 mouse embryos	Murine E10.5 embryo heads	Glyco-gene chip spreadsheet MOE430A chip spreadsheet MOE430B chip spreadsheet
Jeremy Turnbull	Role of the 2-O-sulfotransferase gene in early post-natal brain development	P1 stage mouse brains	Spreadsheet

Last Updated Thursday, 30-Sep-2004 18:26:25 EDT. Please contact us with comments/questions.

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