Overview (Week 1)
Lecture 9/8
Functional Neural Systems (Weeks 2 & 3)
Reading list.
Please note: reading that are assigned from texts other than the course textbook are supplementary.
Lecture 9/13
Overview of Neuroanatomy - handout.
Lecture 9/15
Discussion 9/15
Randy Gollub, MD. PhD.: Human Subjects Safety Handout.
Lecture 9/20
Lab 9/20
Imaging Physiology (Weeks 3, 4 & 5)
Discussion 9/22
Waldvogel D, van Gelderen P, Muellbacher W, Ziemann U, Immisch I, Hallett M.
The relative metabolic demand of inhibition and excitation.
Nature. 2000 Aug 31;406(6799):995-8.
Discussant: Rick Hoge
Presenter: Steven Ulich
Lecture 9/22
Robert Banzett, Ph.D.: Respiratory & CV physiology for fMRI.
Lecture 9/27
Robert Banzett, Ph.D.: Cerebral physiology for fMRI.
Lab 9/27
To be determined
Lecture 9/29
To be determined
Discussion 9/29
Lecture 10/4
To be determined
Experiment Design (Weeks 5 & 6)
Lecture 10/6
O'Craven KM, Rosen BR, Kwong KK, Treisman A and Savoy R, Voluntary attention modulated fMRI activity in
human MT-MST (1997). Neuron 18: 591-598.
Discussion 10/6
Schultz, Gauther, et al. Abnormal Ventral Temporal Cortical Activity During Face Discrimination Among
Individuals With Autism and Asperger Syndrome. Arch Gen Psychiatry Vol 57, April 2000 Pg. 331
Hadjikhani, Joseph, Snyder et al. Activation of the fusiform gyrus when individuals with
autism spectrum disorder view faces. NeuroImage 22 (2004) 1141 1150
Discussant: Nouchine Hadjikhani
Presenters: Christina and Becca.
Lecture 10/13
To be determined
Discussion 10/13
Blood AJ, Flaherty AW, Choi JK, Hochberg FH, Greve DN, Bonmassar G, Rosen BR, Jenkins BG. Basal ganglia activity remains elevated
after movement in focal hand dystonia. Ann Neurol 2004; 55(5):744-8
Discussant: Anne Blood
Presenter: TBD
Physics of Image Acquisition (Weeks 7, 8 9 & 10 )
Lecture 10/18
To be determined
Lab 10/18
To be determined
Lecture 10/20
To be determined
Discussion 10/20
TBD
Discussant: Dan Sodickson
Presenter: TBD
Lecture 10/25
To be determined
Lab 10/25
To be determined
Lecture 10/27
To be determined
Discussion 10/27
To be determined
Lecture 11/1
To be determined
Discussion 11/1
To be determined
Lecture 11/3
To be determined
Discussion 11/3
To be determined
Lecture 11/8
To be determined
Lab 11/8
To be determined
Statistical Analysis (Weeks 11, 12 & 13)
Lecture 11/15
To be determined
Lab 11/15
To be determined
Lecture 11/17
To be determined
Discussion 11/17
Leite FP, Tsao D, Vanduffel W, Fize D, Sasaki Y, Wald LL, Dale AM, Kwong KK, Orban GA, Rosen BR, Tootell RB, Mandeville JB.
Repeated fMRI using iron oxide contrast agent in awake, behaving macaques at 3 Tesla.
Neuroimage. 2002 Jun;16(2):283-94
Discussant: Joe Mandeville
Presenter: TBD
Lecture 11/22
To be determined
Lab 11/22
To be determined
Lecture 11/24
To be determined
Lecture 12/1
To be determined
Discussion 12/1
Nature. 2003 Oct 30;425(6961):954-6.
Spontaneously emerging cortical representations of visual attributes.
Kenet T, Bibitchkov D, Tsodyks M, Grinvald A, Arieli A
Ikegaya Y, Aaron G, Cossart R, Aronov D, Lampl I, Ferster D, Yuste R. Synfire chains and cortical songs:
temporal modules of cortical activity. Science. 2004 Apr 23;304(5670):559-64
Discussant: Chris Moore
Presenter: TBD
Structural and Functional Analysis (Week 14)
Lecture 12/6
To be determined
Lecture 12/8
To be determined
Discussion 12/8
To be determined
Suggested for students with no prior neuroscience background
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Chapters from The Human Brain: An Introduction to Its Functional Anatomy. J. Nolte
- Ch. 1: Introduction to the Nervous System
- Ch. 3: Gross Anatomy and General Organization of the Central Nervous System
Suggested for students with no prior statistics background
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Chapters from Probability and Statistics. M. H. DeGroot and M. J. Schervish
- Ch. 1: Introduction to Probability
- Ch. 2: Conditional Probability
Texts to supplement physiology lectures:
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Pulmonary Physiology and Pathophysiology: An Integrated, Case-Based Approach
by John B. West, Paperback 1st edition (January 15, 2001) Lippincott Williams & Wilkins Publishers; ISBN: 0781729106
Amazon Price: $31.95
Widely used by medical students. Not much depth on neurophysiology of breathing, but good for gas exchange etc.
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Cardiopulmonary System, Daniel R. Richardson, David C. Randall, Dexter F. Speck, Paperback - (January 15, 1998) 353
pages, Amazon Price: $25.95
This book not known to me, but Dexter Speck is a good respiratory neurophysiologist
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Pulmonary Physiology, Michael G. Levitzky, 320 pages 5th edition (1999) McGraw-Hill Professional Publishing; ISBN:
0071345434, Amazon Price: $29.95
I'm told by a colleague this is a good book.
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Human Physiology: The Mechanisms of Body Function, Arthur Vander, James Sherman, Dorothy Lucian 864 pages 8th edition
Book&CDROM (2000) Amazon Price: $119.45 McGraw-Hill Higher Education; ISBN: 0072378441
This is a readable and reliable text covering all systems -- We have used it for years in my department.
Reference Books
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1. Functional Magnetic Resonance Imaging, S. A. Huettel, A. W. Song, and G. McCarthy, Sinauer, April 2004, ISBN 0-87893-288-7.
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2. The Human Brain: An Introduction to Its Functional Anatomy, J. Nolte, C. V. Mosby, 5th edition, January 2002, ISBN 0-32301-320-1.
- Functional MRI: An Introduction to Methods. P. Jezzard, P. M. Matthews, S. M. Smith, eds. Oxford University Press (2001). ISBN 0-19-263071-7
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3. Cerebral Blood Flow and Metabolism. L. Edvinsson and D. N. Krause, eds. Second edition. Lippincott, Williams & Wilkins (2002). ISBN 0-7817-2259-4.
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4. Introduction to Functional Magnetic Resonance Imaging: Principles and Techniques. R. Buxton, ed. Cambridge University Press (2002). ISBN 0-521-58113-3.
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5. Functional MRI: An Introduction to Methods. P. Jezzard, P. M. Matthews, S. M. Smith, eds. Oxford University Press (2001). ISBN 0-19-263071-7
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6. Vander, Sherman, Luciano's Human Physiology: The Mechanisms of Body Function. Eric P. Widmaier, Hershel Raff, Kevin T. Strang. McGraw Hill (2002). 9th edition. ISBN 0-0724-3793-6.
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7. Probability and Statistics. M. H. DeGroot and M. J. Schervish. Addison-Wesley Press (2001). 3rd edition. ISBN 0-201-52488-0.
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8. Cognitive Neuroscience. Michael S. Gazzaniga, Richard B. Ivry, George R. Mangun. Norton & Company (2002). 2nd edition. ISBN 0-393-97777-3.
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9. The Brain Atlas. Joseph Hanaway, Thomas A. Woolsey, Mokhtar Gado, Melville P. J. R. Roberts. Wiley & Sons Inc. (1998). ASIN 1891786067.
Introductory material on Fourier transforms:
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Signals and Systems Made Ridiculously Simple. Z. Z. Karu, ZiZi Press (1995).
Chapter 16: Fourier Transforms
Miscellaneous Useful Materials:
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Chapters from Magnetic Resonance Imaging: Physical Principles and Sequence Design.
Haacke, Brown, Thompson and Venkatesan
- Ch. 1: Magnetic Resonance Imaging: A Preview
- Ch. 2: Clasical Nucleus in Magnetic Field
- Ch. 3: Rotating Reference Frames and Resonance
- Ch. 4: Magnetization, Relaxation and the Bloch Equation
- Ch. 41: MRI I: The Quantum View of Nuclear Magnetic Resonance Imaging
- Ch. 42: MRI II: The Classical View of Nuclear Magnetic Resonance Imaging
- Ch. 43: MRI III: Relaxation Times, Pulse Sequences, and Image Contrast
- Ch. 44: MRI IV: Imaging
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Chapters from The Fast Fourier Transform and its applications. E. O. Brigham
- Ch. 2: The Fourier Transform
- Ch. 3: Fourier Transform Properties
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Chapters from NMR Tomography, Diffusometry, Relaxometry. R. Kimmich
- Ch. 24: Survey
- Ch. 25: Fundamentals of NMR Imaging
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Chapters from: Functional MRI. C.T.W. Moonen and P.A. Bandettini (1999)
- Ch. 11: Basic Theoretical Models of BOLD Signal Change. R. M. Weisskoff
- Ch. 13: Echo-Planar Imaging and Functional MRI. M. S. Cohen
- Ch. 16: Physiological Noise: Strategies for Correction. P. Jezzard.
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An Introduction to NMR Imaging: From the Bloch equation to the imaging equation. W. S. Hinshaw and A. H. Lent, Proc. IEEE, Vol. 71, No. 3, March 1983.
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M. Mesulam, From Sensation to Cognition, Brain (1998), 121, 1013-1052.