fasta-io

Usage:

fasta-io [options] <sequences>

Description

This utility reads a sequence file in FASTA format and writes it to standard output. It serves no purpose other than testing the FASTA reading code.

Input

Sequences

A file containing a set of sequences in FASTA format.

Output

The program prints to standard output.

Options

Option Parameter Description Default Behaviour
General Options
-blocksizen Read sequences in blocks of size n. Read one full sequence at a time.
-dna  Sets alphabet to DNA. The protein alphabet is used.
-many  Read all sequences into memory at start up.
-verbosity1|​2|​3|​4|​5A number that regulates the verbosity level of the output information messages. If set to 1 (quiet) then it will only output error messages whereas the other extreme 5 (dump) outputs lots of mostly useless information.The verbosity level is set to 2 (normal).