fasta-make-index <FASTA file> [options]
Make an index for a FASTA file for use by fasta-fetch.
Sequences in FASTA format from the <FASTA file>
.
Writes a index file to <FASTA file>.index
.
Option | Parameter | Description | Default Behaviour |
---|---|---|---|
General Options | |||
-f | Overwrite an existing file if one exists. | ||
-sp | Make a swissprot index by stripping all but the last part of sequence names. | ||
-l | Index by sequence name and lowercased name. | ||
-aa | Include first amino acid index found in parens. | ||
-gc | genechip format: first field in pipes | ||
-gi | If the identifier starts with "gi|number" replace it with number. |