fasta-most

Usage:

fasta-most [options]

Description

Reads fasta sequences on standard input.

Writes the most frequently occuring sequence length and it's count to standard output.

Input

Sequences in FASTA format from the <FASTA file>.

Output

Writes the most frequently occuring sequence length followed by the number of times it occurred to standard output.

Options

Option Parameter Description Default Behaviour
General Options
-minlength The minimum sequence length to consider. Any non-zero sequence length below or equal to the value set by -max will be considered.
-maxlength The maximum seqence length to consider. Any sequence length above or equal to the value set by -min will be considered.
-h  Print a help message and exit. Runs as normal.