The Net Advance of Physics:
EVOLUTION

EVOLUTION and POPULATION GENETICS

• General: Baake and Gabriel 99/07; Drossel 2001/01;
  • Stochastic Models of Evolution in Genetics, Ecology and Linguistics by R. A. Blythe and A. J. McKane [2007/03]
  • Computational modelling of evolution: ecosystems and language by Adam Lipowski and Dorota Lipowska [2007/10]
  • Complex and Adaptive Dynamical Systems: A Primer by Claudius Gros [Springer, 2008]
  • Statistical Genetics and Evolution of Quantitative Traits by Richard A. Neher and Boris I. Shraiman [2011/08]
  • Persistence for stochastic difference equations: A mini-review by Sebastian J. Schreiber [2011/09]
  • Statistical Physics of Biological Evolution by Joachim Krug [2012/04]
  • Major open problems in chaos theory and nonlinear dynamics by Y. Charles Li [2013/05]
  • A Survey on Migration-Selection Models in Population Genetics by Reinhard Bürger [2013/09]
  • Introductory Lectures on Stochastic Population Systems by Donald A. Dawson [2017/05] 256 pp.
  • Population Genetics and Evolution by Joachim Krug [2018/03]
  • Progress and open problems in evolutionary dynamics by Richard A. Neher and Aleksandra M. Walczak [2018/04]
  • Evolution and Probability by Luca Peliti [2019/01]
  • An Overview of Open-Ended Evolution by Norman Packard et al. [Artificial Life 25, 93 (2019)] Introduction to proceedings of 2018 Tokyo conference.

• General: NUMERICAL METHODS and SIMULATIONS: Rodriguez 2006/06;
  • A Guide to General-Purpose Approximate Bayesian Computation Software by Athanasios Kousathanas et al. [2018/06]

• Type: PUNCTUATED EQUILIBRIUM: Paczuski and Bak 99/06;

• Aspect: CONSENSUS:
  • The Emergence of Consensus by Andrea Baronchelli [2017/04]

• Aspect: CORRELATIONS:
  • Fluctuations and correlations in chemical reaction kinetics and population dynamics by Uwe C. Täuber [2018/07]

• Aspect: EXTINCTION:
  • Stochastic models of population extinction by Otso Ovaskainen and Baruch Meerson [2010/08]
  • Mass extinctions and supernova explosions by Gunther Korschinek [2016/09]
  • A primer on noise-induced transitions in applied dynamical systems by Eric Forgoston and Richard O. Moore [2017/12]

• Aspect: FLUCTUATIONS:
  • Fluctuations and correlations in chemical reaction kinetics and population dynamics by Uwe C. Täuber [2018/07]

• Aspect: PHYLOGENETIC NETWORKS:
  • Phylogenetic Networks by Elizabeth Gross et al. [2019/06] For undergraduate research students.

• Aspect: SUPERTREES:
  • Supertree Construction: Opportunities and Challenges by Tandy Warnow [2018/05]

• Re: CELLULAR AUTOMATA:
  • Self-reproduction and evolution in cellular automata: Twenty-five years after evoloops by H. Sayama and C. L. Nehaniv [2024/02]

• Re: COMPUTATION;

• Re: CHIRALTIY:
  • Recent Progress in Chirality Research Using Circularly Polarized Light by Tsubasa Fukue [2010/09]

• Re: CO-OPERATION:
  • Coevolutionary games - a mini review by Matjaz Perc and Attila Szolnoki [2009/10]

• Re: CRISPR:
  • The physicist's guide to one of biotechnology's hottest new topics: CRISPR-Cas by Melia E. Bonomo and Michael W. Deem [2017/12]

• Re: GAMES:
  • Evolutionary Games on Graphs by Gyorgy Szabo and Gabor Fath [2006/07]
  • Evolutionary game theory and population dynamics by Jacek Miekisz [2006/09]
  • Coevolutionary games - a mini review by Matjaz Perc and Attila Szolnoki [2009/10]
  • Evolutionary Multiplayer Games by Chaitanya S. Gokhale and Arne Traulsen [Dynamic Games and Applications, 10.1007/s13235-014-0106-2 (2014)]
  • Cyclic dominance in evolutionary games: A review by Attila Szolnoki et al. [2014/08]

• Re: FINANCIAL SCIENCE:
  • Modeling Market Mechanism with Evolutionary Games by Yi-Cheng Zhang [Europhysics News, (March/April 1998)]

• Re: INFORMATION THEORY:
  • The use of information theory in evolutionary biology by Christoph Adami [2011/12]

• Re: LANGUAGES:
  • Diversity, competition, extinction: the ecophysics of language change by Ricard V. Solé et al. [2010/04]

• Re: STATISTICAL MECHANICS: Peliti 97/12;
  • Statistical Genetics and Evolution of Quantitative Traits by Richard A. Neher and Boris I. Shraiman [2011/08]
  • Statistical Physics of Biological Evolution by Joachim Krug [2012/04]
  • Bacterial growth: a statistical physicist's guide by Rosalind J. Allen and Bartlomiej Waclaw [2018/12]

THE NET ADVANCE OF PHYSICS