From BEH 952 Special Topics: Applications of Mass Spectrometry to Proteomics.
ExPASy.
PROWL.
Matrix Science (MASCOT).
Protein Prospector.
CMS Molecular Biology Resource.
OWL.
PEPSEA.
National Biotechnology Information Facility.
Amino acid sidechain structures.
Global Proteome Machine (X!Hunter, X!Tandem).
Some MS/MS analysis tools from NCRR.
OMSSA MS/MS search engine from NCBI.
Calculate peptide exact masses.
Proteomics identifications data base (PRIDE) from EBI.
RSCB Protein Data Bank.
Protein Explorer Front Door (with recent advisories).
Some proteomics calculators from the Institute for Systems Biology.
Many proteomics tools from the Seattle Proteome Center.
News and tools from Proteome Commons.
Peptide sequencing tutorial.
MIT Mascot.
Mass spec utilities.
MS/MS tools from the National Center for Research Resources.
The Protein Data Bank.
Gateway for molecular viewing resources.
MIT Spectrum Mill (requires certificates and Internet Explorer).
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