WEB TOOLS

RBS Library Calculator
Uniform sampling of protein expression for efficient combinatorial optimization

ApE
Free plasmid editor software download

JBEI Registry
Public registry of standard biological parts.

Registry of Standard Biological Parts
Public registry of standard biological parts; mostly for iGEM

Cyflogic
Free cytometry data analysis software

Mobyl@pasteur
Sequence Alignment and Analysis (ClustalW)

Protein Calculator
Protein Properties

Random DNA Generator
Generates a random DNA sequence with defined GC content

Restriction Mapper
Finds restriction sites in a DNA sequence

Mfold
RNA and DNA folding algorithms

SignalP
Signal peptide cleavage site predictor

Microbes On-line
Genome analysis tools

RBS Generator
Source code

Oligocalc
RNA and DNA oligo properties

GeneDesign 3.0
Various gene construction tools

DNA/RNA/Protein Molecular Weight Calculator

BioMath Calculators
Useful unit converstions

Ammonium Sulfate Calculator
Computes the amount of solid ammonium sulfate required to reach a given percent saturation

E. coli Statistics
Useful informatin on E. coli

Cold Springs Harbor Protocols
Journal of laboratory protocols

Centrifugation Rotor Calculator
Interconverts RPM and RCF for common rotors

Graphical Codon Usage Analyser
Calculates codon usage statistics from a DNA sequence

Finnzymes Tm Calculator
DNA melting temp calculator for Phusion PCR(nearest-neighbor method)

ProTISA
Database of confirmed prokaryotic translation initiation sites

Online Analysis Tools
Various useful bioinformatics resources

Plasmid Databases
Links to various plasmid sequence resources

BLAST: Basic Local Alignment Search Tool
Protein and nucleotide sequence database alignment tool

LALIGN
Basic sequence alignment tool

FCSExtract Utility
Converts *.*fcs files to *.*csv files