Resampling-based multiple hypothesis testing

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Documentation for package ‘multtest’ version 2.34.0

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ABH.h0 Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
as.list Methods for MTP and EBMTP objects in Package 'multtest'
as.list-method Methods for MTP and EBMTP objects in Package 'multtest'
as.list-methods Methods for MTP and EBMTP objects in Package 'multtest'
dens.est Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
EBMTP A function to perform empirical Bayes resampling-based multiple hypothesis testing
EBMTP-class Class "EBMTP", classes and methods for empirical Bayes multiple testing procedure output
EBMTP-method Class "EBMTP", classes and methods for empirical Bayes multiple testing procedure output
EBMTP-methods Methods for MTP and EBMTP objects in Package 'multtest'
ebmtp2mtp Methods for MTP and EBMTP objects in Package 'multtest'
ebmtp2mtp-method Methods for MTP and EBMTP objects in Package 'multtest'
ebmtp2mtp-methods Methods for MTP and EBMTP objects in Package 'multtest'
EBupdate Methods for MTP and EBMTP objects in Package 'multtest'
EBupdate-method Methods for MTP and EBMTP objects in Package 'multtest'
EBupdate-methods Methods for MTP and EBMTP objects in Package 'multtest'
G.VS Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
golub Gene expression dataset from Golub et al. (1999)
golub.cl Gene expression dataset from Golub et al. (1999)
golub.gnames Gene expression dataset from Golub et al. (1999)
Hsets Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
mt.maxT Step-down maxT and minP multiple testing procedures
mt.minP Step-down maxT and minP multiple testing procedures
mt.plot Plotting results from multiple testing procedures
mt.rawp2adjp Adjusted p-values for simple multiple testing procedures
mt.reject Identity and number of rejected hypotheses
mt.sample.label Permutation distribution of test statistics and raw (unadjusted) p-values
mt.sample.rawp Permutation distribution of test statistics and raw (unadjusted) p-values
mt.sample.teststat Permutation distribution of test statistics and raw (unadjusted) p-values
mt.teststat Computing test statistics for each row of a data frame
mt.teststat.num.denum Computing test statistics for each row of a data frame
MTP A function to perform resampling-based multiple hypothesis testing
MTP-class Class "MTP", classes and methods for multiple testing procedure output
MTP-methods Methods for MTP and EBMTP objects in Package 'multtest'
mtp2ebmtp Methods for MTP and EBMTP objects in Package 'multtest'
mtp2ebmtp-method Methods for MTP and EBMTP objects in Package 'multtest'
mtp2ebmtp-methods Methods for MTP and EBMTP objects in Package 'multtest'
plot Methods for MTP and EBMTP objects in Package 'multtest'
plot-method Methods for MTP and EBMTP objects in Package 'multtest'
plot-methods Methods for MTP and EBMTP objects in Package 'multtest'
print-method Methods for MTP and EBMTP objects in Package 'multtest'
print-methods Methods for MTP and EBMTP objects in Package 'multtest'
print.MTP Methods for MTP and EBMTP objects in Package 'multtest'
summary Methods for MTP and EBMTP objects in Package 'multtest'
summary-method Methods for MTP and EBMTP objects in Package 'multtest'
summary-methods Methods for MTP and EBMTP objects in Package 'multtest'
update Methods for MTP and EBMTP objects in Package 'multtest'
update-method Methods for MTP and EBMTP objects in Package 'multtest'
update-methods Methods for MTP and EBMTP objects in Package 'multtest'
VScount Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
[-method Methods for MTP and EBMTP objects in Package 'multtest'
[-methods Methods for MTP and EBMTP objects in Package 'multtest'