Map between Entrez Gene IDs and Genes

Description

org.Hs.egGENENAME is an R object that maps entrez gene identifiers to the corresponding gene name.

Details

Each entrez gene identifier maps to a named vector containing the gene name. The vector name corresponds to the entrez gene identifier. If the gene name is unknown, the vector will contain an NA.

Gene names currently include both the official (validated by a nomenclature committee) and preferred names (interim selected for display) for genes. Efforts are being made to differentiate the two by adding a name to the vector.

Mappings were based on data provided by: Entrez Gene ftp://ftp.ncbi.nlm.nih.gov/gene/DATA With a date stamp from the source of: 2017-Nov6

See Also

• AnnotationDb-class for use of the select() interface.

Examples

## select() interface:
## Objects in this package can be accessed using the select() interface
## from the AnnotationDbi package. See ?select for details.

## Bimap interface:
x <- org.Hs.egGENENAME
# Get the gene names that are mapped to an entrez gene identifier
mapped_genes <- mappedkeys(x)
# Convert to a list
xx <- as.list(x[mapped_genes])
if(length(xx) > 0) {
  # Get the GENE NAME for the first five genes
  xx[1:5]
  # Get the first one
  xx[[1]]
}