The first part of this puzzle is a standard diagramless crossword. Ignore the "leftovers" for now; save them for later.
Note that the To find clues give An integral eigenvector of the largest real eigenvalue. So:
You should get something very close to the column vector
[25 15 21 18 1 14 19 23 5 18 9 19 6 18 9 5 14 4]
Converting this back to letters gives YOUR ANSWER IS FRIEND.
Solution fixed in 2010 by the archivists of Beginner's Luck. Originally the eigenvector had an additional number 13 before the 6, and showed this grid from a different version of the puzzle.
2006 MIT Mystery Hunt