Cluster TH0001:
 YBL016W  FUS3 11 2 mitogen-activated protein kinase (MAP kinase)
 YDL159W  STE7 6 2 ser/thr/tyr protein kinase of MAP kinase kinase family
 YDR103W  STE5 12 2 pheromone signal transduction pathway protein
Cluster TH0002:
 YGR172C  YIP1 16 2 golgi membrane protein
 YNL044W  YIP3 10 2 protein of unknown function
 YNL263C  YIF1 6 2 SLH1P Interacting Factor
Cluster TH0003:
 YBR094W  3 2 weak similarity to pig tubulin-tyrosine ligase (Class III)
 YLR264W  RPS28B 7 2 40S small subunit ribosomal protein S28.e.c12
 YOL149W  DCP1 21 2 mRNA decapping enzyme
Cluster TH0004:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YLR288C  MEC3 82 2 G2-specific checkpoint protein
 YNL301C  RPL18B 3 2 60S large subunit ribosomal protein L18.e
Cluster TH0005:
 YLR313C  SPH1 6 2 required for bipolar bud site selection
 YLR319C  BUD6 9 2 bud site selection protein
 YLR362W  STE11 16 2 ser/thr protein kinase of the MEKK family
Cluster TH0006:
 YDR328C  SKP1 17 2 kinetochore protein complex CBF3, subunit D
 YLR224W  2 2 hypothetical protein (Class V)
 YOR057W  SGT1 4 2 suppressor of G2 allele of SKP1
Cluster TH0007:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YHR152W  SPO12 15 2 sporulation protein
 YLR288C  MEC3 82 2 G2-specific checkpoint protein
Cluster TH0008:
 YEL015W  12 2 weak similarity to SPA2P (Class III)
 YNL118C  DCP2 5 2 suppressor protein of a yeast pet mutant
 YOL149W  DCP1 21 2 mRNA decapping enzyme
Cluster TH0009:
 YEL015W  12 2 weak similarity to SPA2P (Class III)
 YJR022W  LSM8 28 2 splicing factor
 YNL118C  DCP2 5 2 suppressor protein of a yeast pet mutant
Cluster TH0010:
 YBR094W  3 2 weak similarity to pig tubulin-tyrosine ligase (Class III)
 YOL149W  DCP1 21 2 mRNA decapping enzyme
 YOR167C  RPS28A 14 2 40S small subunit ribosomal protein S28.e.c15
Cluster TH0011:
 YDL030W  PRP9 18 2 pre-mRNA splicing factor (snRNA-associated protein)
 YML049C  RSE1 2 2 involved in RNA splicing and ER to Golgi transport
 YMR117C  SPC24 20 2 spindle pole body protein
Cluster TH0012:
 YGL096W  TOS8 4 2 similarity to copper homeostasis protein CUP9P (Class III)
 YJR022W  LSM8 28 2 splicing factor
 YOR319W  HSH49 7 2 essential yeast splicing factor
Cluster TH0013:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YLR453C  RIF2 80 2 RAP1P interacting factor 2
 YNR071C  4 2 strong similarity to UDP-glucose 4-epimerase GAL10P (Class II)
Cluster TH0014:
 YDR148C  KGD2 11 2 2-oxoglutarate dehydrogenase complex E2 component
 YHR114W  BZZ1 91 2 similarity to S.pombe hypothetical protein and human protein-tyrosine kinase fer (Class III)
 YNL092W  29 2 similarity to hypothetical C. elegans proteins Y48E1C.2 and Y48E1C.c (Class IV)
Cluster TH0015:
 YER165W  PAB1 15 2 mRNA polyadenylate-binding protein
 YGR162W  TIF4631 6 2 mRNA cap-binding protein (eIF4F), 150K subunit
 YOL139C  CDC33 5 2 translation initiation factor eIF4E
Cluster TH0016:
 YML092C  PRE8 14 2 20S proteasome subunit Y7 (alpha2)
 YMR047C  NUP116 127 2 nuclear pore protein
 YOR020C  HSP10 9 2 chaperonin, mitochondrial
Cluster TH0017:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
 YHR058C  MED6 6 2 RNA polymerase II transcriptional regulation mediator
Cluster TH0018:
 YDR408C  ADE8 4 2 phosphoribosylglycinamide formyltransferase (GART)
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
 YOR174W  MED4 11 2 transcription regulation mediator
Cluster TH0019:
 YDL239C  ADY3 31 2 hypothetical protein (Class V)
 YDR176W  NGG1 23 2 general transcriptional adaptor or co-activator
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0020:
 YJR102C  VPS25 5 2 weak similarity to hypothetical protein D. melanogaster (Class IV)
 YLR417W  VPS36 3 2 defective in vacuolar protein sorting
 YPL002C  SNF8 4 2 involved in glucose derepression
Cluster TH0021:
 YBL049W  3 2 strong similarity to hypothetical protein - human (Class IV)
 YGR172C  YIP1 16 2 golgi membrane protein
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
Cluster TH0022:
 YDL160C  DHH1 13 2 putative RNA helicase of the DEAD box family
 YEL015W  12 2 weak similarity to SPA2P (Class III)
 YOL149W  DCP1 21 2 mRNA decapping enzyme
Cluster TH0023:
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
 YLR108C  4 2 strong similarity to YDR132C (Class IV)
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0024:
 YDR167W  TAF25 22 2 TFIID and SAGA subunit
 YML015C  TAF40 5 2 TFIID subunit (TBP-associated factor), 40KD
 YML098W  TAF19 4 2 TFIID subunit (TBP-associated factor), 19 kD
Cluster TH0025:
 YKL103C  LAP4 10 2 aminopeptidase yscI precursor, vacuolar
 YOL082W  CVT19 18 2 similarity to YOL083W (Class IV)
 YOR302W  JUNP 7 2 CPA1 leader peptide
Cluster TH0026:
 YFR002W  NIC96 7 2 nuclear pore protein
 YJL039C  NUP192 6 2 nucleoporin localize at the inner site of the nuclear membrane
 YMR153W  NUP53 25 2 component of the karyopherin docking complex of the nuclear pore complex
Cluster TH0027:
 YEL015W  12 2 weak similarity to SPA2P (Class III)
 YGR218W  CRM1 38 2 nuclear export factor, exportin
 YOL149W  DCP1 21 2 mRNA decapping enzyme
Cluster TH0028:
 YMR309C  NIP1 7 2 associated with 40s ribosomal subunit
 YNL244C  SUI1 3 2 translation initiation factor 3 (eIF3)
 YOR361C  PRT1 7 2 translation initiation factor eIF3 subunit
Cluster TH0029:
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YPL070W  30 2 weak similarity to VPS9P (Class III)
 YPL124W  NIP29 14 2 nuclear import protein
Cluster TH0030:
 YKL002W  DID4 41 2 class E vacuolar-protein sorting and endocytosis factor
 YLR108C  4 2 strong similarity to YDR132C (Class IV)
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0031:
 YDL239C  ADY3 31 2 hypothetical protein (Class V)
 YER086W  ILV1 7 2 anabolic serine and threonine dehydratase precursor
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0032:
 YDL239C  ADY3 31 2 hypothetical protein (Class V)
 YPL070W  30 2 weak similarity to VPS9P (Class III)
 YPL124W  NIP29 14 2 nuclear import protein
Cluster TH0033:
 YDR390C  UBA2 3 2 E1-like (ubiquitin-activating) enzyme
 YGR048W  UFD1 5 2 ubiquitin fusion degradation protein
 YKR002W  PAP1 10 2 poly(A) polymerase
Cluster TH0034:
 YDL159W  STE7 6 2 ser/thr/tyr protein kinase of MAP kinase kinase family
 YDR103W  STE5 12 2 pheromone signal transduction pathway protein
 YGR040W  KSS1 7 2 ser/thr protein kinase of the MAP kinase family
Cluster TH0035:
 YNL113W  RPC19 7 2 DNA-directed RNA polymerase I,III 16 KD subunit
 YPR010C  RPA135 5 2 DNA-directed RNA polymerase I, 135 KD subunit
 YPR110C  RPC40 6 2 DNA-directed RNA polymerase I, III 40 KD subunit
Cluster TH0036:
 YBR202W  CDC47 4 2 cell division control protein
 YEL032W  MCM3 2 2 replication initiation protein
 YLR274W  CDC46 3 2 cell division control protein
Cluster TH0037:
 YBR057C  MUM2 4 2 meiotic protein
 YCL055W  KAR4 5 2 regulatory protein required for pheromone induction of karyogamy genes
 YGL192W  IME4 2 2 positive transcription factor for IME2
Cluster TH0038:
 YDR259C  YAP6 23 2 transcription factor, of a fungal-specific family of bzip proteins
 YDR311W  TFB1 24 2 TFIIH subunit (transcription initiation factor), 75 kD
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0039:
 YBR270C  20 2 strong similarity to hypothetical protein YJL058C (Class IV)
 YIL105C  8 2 weak similarity to probable transcription factor ASK10P (Class III)
 YNL047C  9 2 similarity to probable transcription factor ASK10P and hypothetical protein YPR115W, and strong similarity to hypothetical protein YIL105C (Class III)
Cluster TH0040:
 YBR017C  KAP104 10 2 beta-karyopherin
 YGL122C  NAB2 8 2 nuclear poly(A)-binding protein
 YOL123W  HRP1 5 2 CF Ib (RNA3' Cleavage factor Ib)
Cluster TH0041:
 YGR119C  NUP57 22 2 nuclear pore protein
 YMR294W  JNM1 12 2 mitosis protein, involved in nuclear migration
 YOL069W  NUF2 8 2 spindle pole body protein
Cluster TH0042:
 YEL015W  12 2 weak similarity to SPA2P (Class III)
 YLR264W  RPS28B 7 2 40S small subunit ribosomal protein S28.e.c12
 YOL149W  DCP1 21 2 mRNA decapping enzyme
Cluster TH0043:
 YEL015W  12 2 weak similarity to SPA2P (Class III)
 YJR022W  LSM8 28 2 splicing factor
 YLR264W  RPS28B 7 2 40S small subunit ribosomal protein S28.e.c12
Cluster TH0044:
 YDL246C  6 2 strong similarity to SOR1P (Class II)
 YJR159W  SOR1 6 2 sorbitol dehydrogenase
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
Cluster TH0045:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YJR094C  IME1 3 2 transcription factor required for sporulation
 YMR139W  RIM11 6 2 ser/thr protein kinase
Cluster TH0046:
 YDL065C  PEX19 12 2 required for biogenesis of peroxisomes - peroxin
 YGR119C  NUP57 22 2 nuclear pore protein
 YGR218W  CRM1 38 2 nuclear export factor, exportin
Cluster TH0047:
 YHR172W  SPC97 6 2 spindle pole body component
 YLR212C  TUB4 7 2 gamma tubulin
 YNL126W  SPC98 5 2 spindle pole body component
Cluster TH0048:
 YAL047C  SPC72 6 2 STU2P Interactant
 YHR172W  SPC97 6 2 spindle pole body component
 YNL126W  SPC98 5 2 spindle pole body component
Cluster TH0049:
 YDR356W  NUF1 4 2 spindle pole body component
 YHR172W  SPC97 6 2 spindle pole body component
 YNL126W  SPC98 5 2 spindle pole body component
Cluster TH0050:
 YJL154C  VPS35 5 2 protein-sorting protein, vacuolar
 YOR069W  VPS5 3 2 involved in Golgi retention and vacuolar sorting
 YOR132W  VPS17 2 2 vacuolar protein sorting-associated protein
Cluster TH0051:
 YDR259C  YAP6 23 2 transcription factor, of a fungal-specific family of bzip proteins
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YNR052C  POP2 8 2 required for glucose derepression
Cluster TH0052:
 YBR160W  CDC28 14 2 cyclin-dependent protein kinase
 YLR079W  SIC1 2 2 p40 inhibitor of CDC28P-Clb protein kinase complex
 YPR120C  CLB5 3 2 cyclin, B-type
Cluster TH0053:
 YFL016C  MDJ1 6 2 heat shock protein - chaperone
 YJR045C  SSC1 4 2 mitochondrial heat shock protein 70-related protein
 YOR232W  MGE1 9 2 heat shock protein - chaperone
Cluster TH0054:
 YGL153W  PEX14 14 2 peroxisomal protein involved in protein import - peroxin
 YLR284C  ECI1 5 2 delta3-cis-delta2-trans-enoyl-CoA isomerase
 YOR180C  DCI1 6 2 Enoyl-CoA Hydratase, peroxisomal
Cluster TH0055:
 YIL105C  8 2 weak similarity to probable transcription factor ASK10P (Class III)
 YMR068W  4 2 weak similarity to mouse transcription factor NF-kappa B (Class III)
 YNL047C  9 2 similarity to probable transcription factor ASK10P and hypothetical protein YPR115W, and strong similarity to hypothetical protein YIL105C (Class III)
Cluster TH0056:
 YGR166W  KRE11 10 2 beta-glucan synthesis-associated protein
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
 YOR197W  5 2 strong similarity to hypothetical protein SPCC1840.04 S. pombe (Class IV)
Cluster TH0057:
 YLR284C  ECI1 5 2 delta3-cis-delta2-trans-enoyl-CoA isomerase
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0058:
 YEL066W  HPA3 6 2 histone and other protein acetyltransferase
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0059:
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
 YPL124W  NIP29 14 2 nuclear import protein
Cluster TH0060:
 YJL218W  4 2 strong similarity to E.coli galactoside O-acetyltransferase (Class II)
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0061:
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YNL331C  AAD14 5 2 strong similarity aryl-alcohol reductase (Class II)
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0062:
 YER023W  PRO3 5 2 delta 1-pyrroline-5-carboxylate reductase
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0063:
 YDR321W  ASP1 4 2 asparaginase
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0064:
 YBR045C  GIP1 8 2 GLC7-interacting protein
 YIL045W  PIG2 5 2 Protein Interacting with GSY2P
 YOR178C  GAC1 5 2 ser/thr phosphoprotein phosphatase 1, regulatory chain
Cluster TH0065:
 YFR008W  7 2 weak similarity to human centromere protein E (Class III)
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YMR052W  FAR3 7 2 involved in pheromone-mediated cell cycle arrest
Cluster TH0066:
 YFR008W  7 2 weak similarity to human centromere protein E (Class III)
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0067:
 YFL008W  SMC1 6 2 chromosome segregation protein
 YIL026C  IRR1 3 2 essential protein
 YJL074C  SMC3 3 2 required for structural maintenance of chromosomes
Cluster TH0068:
 YDL239C  ADY3 31 2 hypothetical protein (Class V)
 YDR148C  KGD2 11 2 2-oxoglutarate dehydrogenase complex E2 component
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0069:
 YBR270C  20 2 strong similarity to hypothetical protein YJL058C (Class IV)
 YMR236W  TAF17 20 2 TFIID and SAGA subunit
 YOR047C  STD1 31 2 dosage-dependent modulator of glucose repression
Cluster TH0070:
 YGR218W  CRM1 38 2 nuclear export factor, exportin
 YIL063C  YRB2 4 2 involved in nuclear protein export
 YLR293C  GSP1 12 2 GTP-binding protein of the ras superfamily
Cluster TH0071:
 YIL063C  YRB2 4 2 involved in nuclear protein export
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
 YLR293C  GSP1 12 2 GTP-binding protein of the ras superfamily
Cluster TH0072:
 YJL041W  NSP1 7 2 nuclear pore protein
 YJL061W  NUP82 6 2 nuclear pore protein
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0073:
 YHR114W  BZZ1 91 2 similarity to S.pombe hypothetical protein and human protein-tyrosine kinase fer (Class III)
 YML092C  PRE8 14 2 20S proteasome subunit Y7 (alpha2)
 YOL082W  CVT19 18 2 similarity to YOL083W (Class IV)
Cluster TH0074:
 YAL021C  CCR4 2 2 transcriptional regulator
 YGR092W  DBF2 7 2 ser/thr protein kinase related to DBF20P
 YNR052C  POP2 8 2 required for glucose derepression
Cluster TH0075:
 YGR119C  NUP57 22 2 nuclear pore protein
 YMR294W  JNM1 12 2 mitosis protein, involved in nuclear migration
 YPR083W  2 2 hypothetical protein (Class V)
Cluster TH0076:
 YCR088W  ABP1 4 2 actin-binding protein
 YDR388W  RVS167 9 2 reduced viability upon starvation protein
 YFL039C  ACT1 22 2 actin
Cluster TH0077:
 YGR119C  NUP57 22 2 nuclear pore protein
 YGR120C  SEC35 14 2 required for ER to golgi vesicle docking
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0078:
 YGR120C  SEC35 14 2 required for ER to golgi vesicle docking
 YLR423C  APG17 62 2 protein involved in authophagy
 YOR158W  PET123 5 2 ribosomal protein, mitochondrial
Cluster TH0079:
 YDR429C  TIF35 6 2 translation initiation factor eIF3 (p33 subunit)
 YMR146C  TIF34 4 2 translation initiation factor eIF3, p39 subunit
 YPL105C  5 2 similarity to SMY2P (Class III)
Cluster TH0080:
 YGR120C  SEC35 14 2 required for ER to golgi vesicle docking
 YLR423C  APG17 62 2 protein involved in authophagy
 YPR105C  11 2 similarity to hypothetical protein SPCC338.13 S. pombe (Class IV)
Cluster TH0081:
 YIL105C  8 2 weak similarity to probable transcription factor ASK10P (Class III)
 YNL047C  9 2 similarity to probable transcription factor ASK10P and hypothetical protein YPR115W, and strong similarity to hypothetical protein YIL105C (Class III)
 YPL059W  GRX5 5 2 member of the subfamily of yeast glutaredoxins (Grx3, GRX4, and Grx5)
Cluster TH0082:
 YBR270C  20 2 strong similarity to hypothetical protein YJL058C (Class IV)
 YHR166C  CDC23 15 2 subunit of anaphase-promoting complex (cyclosome)
 YPL124W  NIP29 14 2 nuclear import protein
Cluster TH0083:
 YDR120C  TRM1 4 2 N2,N2-dimethylguanine tRNA methyltransferase
 YEL017W  12 2 hypothetical protein (Class V)
 YIR038C  GTT1 23 2 glutathione S-transferase
Cluster TH0084:
 YDL002C  NHP10 3 2 Non-histone protein
 YER092W  IES5 4 2 weak similarity to tryptophan synthase beta subunit - Aquifex aeolicus (Class III)
 YLR052W  IES3 6 2 hypothetical protein (Class V)
Cluster TH0085:
 YGR162W  TIF4631 6 2 mRNA cap-binding protein (eIF4F), 150K subunit
 YOL139C  CDC33 5 2 translation initiation factor eIF4E
 YOR276W  CAF20 3 2 mRNA CAP-binding protein (eIF4F), 20K subunit
Cluster TH0086:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YGR218W  CRM1 38 2 nuclear export factor, exportin
 YKL143W  LTV1 5 2 low-temperature viability protein
Cluster TH0087:
 YDL130W  RPP1B 14 2 60S large subunit acidic ribosomal protein L44prime
 YLR287C  3 2 weak similarity to S.pombe hypothetical protein SPAC22E12 (Class IV)
 YLR340W  RPP0 4 2 acidic ribosomal protein L10.e
Cluster TH0088:
 YDR388W  RVS167 9 2 reduced viability upon starvation protein
 YFL039C  ACT1 22 2 actin
 YOR181W  LAS17 6 2 component of actin cortical patches
Cluster TH0089:
 YBR200W  BEM1 10 2 bud emergence mediator
 YDL178W  AIP2 2 2 actin interacting protein 2
 YFL039C  ACT1 22 2 actin
Cluster TH0090:
 YDR225W  HTA1 4 2 histone H2A
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
Cluster TH0091:
 YJR056C  3 2 hypothetical protein (Class V)
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YNR012W  URK1 10 2 uridine kinase
Cluster TH0092:
 YDR167W  TAF25 22 2 TFIID and SAGA subunit
 YER148W  SPT15 10 2 the TATA-binding protein TBP
 YGR274C  TAF145 2 2 TFIID subunit (TBP-associated factor), 145 kD
Cluster TH0093:
 YEL036C  ANP1 4 2 required for protein glycosylation in the golgi
 YJR075W  HOC1 3 2 suppressor of PKC1
 YPL050C  MNN9 4 2 required for complex N-glycosylation
Cluster TH0094:
 YNL032W  SIW14 4 2 similarity to YNL099C, YNL056W and YDR067C (Class IV)
 YNL056W  2 2 similarity to YNL032W and YNL099C (Class IV)
 YNL099C  6 2 similarity to YNL032W, YNL056W and YDR067C (Class IV)
Cluster TH0095:
 YHR060W  VMA22 10 2 vacuolar ATPase assembly protein
 YKL119C  VPH2 2 2 H+-ATPase assembly protein
 YOR270C  VPH1 2 2 H+-ATPase V0 domain 95K subunit, vacuolar
Cluster TH0096:
 YLR245C  CDD1 4 2 cytidine deaminase
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0097:
 YFL012W  2 2 hypothetical protein (Class V)
 YHR114W  BZZ1 91 2 similarity to S.pombe hypothetical protein and human protein-tyrosine kinase fer (Class III)
 YPL111W  CAR1 6 2 arginase
Cluster TH0098:
 YBR270C  20 2 strong similarity to hypothetical protein YJL058C (Class IV)
 YDR259C  YAP6 23 2 transcription factor, of a fungal-specific family of bzip proteins
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0099:
 YDL239C  ADY3 31 2 hypothetical protein (Class V)
 YDR148C  KGD2 11 2 2-oxoglutarate dehydrogenase complex E2 component
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0100:
 YLR245C  CDD1 4 2 cytidine deaminase
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0101:
 YBL050W  SEC17 11 2 transport vesicle fusion protein
 YLR093C  NYV1 2 2 v-SNARE, vacuolar
 YOR106W  VAM3 5 2 syntaxin (t-SNARE)
Cluster TH0102:
 YLR335W  NUP2 6 2 nuclear pore protein
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
 YOR020C  HSP10 9 2 chaperonin, mitochondrial
Cluster TH0103:
 YAL005C  SSA1 4 2 heat shock protein of HSP70 family, cytosolic
 YAL040C  CLN3 7 2 cyclin, G1/S-specific
 YNL064C  YDJ1 2 2 mitochondrial and ER import protein
Cluster TH0104:
 YDL195W  SEC31 4 2 component of the COPII coat of ER-golgi vesicles
 YIL109C  SEC24 7 2 component of COPII coat of ER-Golgi vesicles
 YPR181C  SEC23 9 2 component of COPII coat of ER-golgi vesicles
Cluster TH0105:
 YIL109C  SEC24 7 2 component of COPII coat of ER-Golgi vesicles
 YLR268W  SEC22 10 2 synaptobrevin (V-SNARE)
 YPR181C  SEC23 9 2 component of COPII coat of ER-golgi vesicles
Cluster TH0106:
 YKL074C  MUD2 8 2 pre-mRNA splicing factor
 YLR116W  MSL5 18 2 branch point bridging protein
 YML046W  PRP39 2 2 pre-mRNA splicing factor
Cluster TH0107:
 YAL032C  PRP45 7 2 pre-mRNA splicing factor
 YOR036W  PEP12 11 2 syntaxin (T-SNARE), vacuolar
 YPL151C  PRP46 4 2 strong similarity to A.thaliana PRL1 and PRL2 proteins (Class II)
Cluster TH0108:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YHR152W  SPO12 15 2 sporulation protein
 YJR148W  BAT2 2 2 branched chain amino acid aminotransferase, cytosolic
Cluster TH0109:
 YCR088W  ABP1 4 2 actin-binding protein
 YFL039C  ACT1 22 2 actin
 YNL138W  SRV2 3 2 adenylate cyclase-associated protein, 70kDa
Cluster TH0110:
 YDL055C  PSA1 2 2 mannose-1-phosphate guanyltransferase
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0111:
 YKL067W  YNK1 3 2 nucleoside diphosphate kinase
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0112:
 YLR347C  KAP95 35 2 karyopherin-beta
 YLR377C  FBP1 5 2 fructose-1,6-bisphosphatase
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0113:
 YDR353W  TRR1 4 2 thioredoxin reductase (NADPH)
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0114:
 YLR328W  7 2 strong similarity to YGR010W (Class IV)
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0115:
 YGL037C  PNC1 3 2 similarity to PIR:B70386 pyrazinamidase/nicotinamidase - Aquifex aeolicus (Class IV)
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0116:
 YBR176W  ECM31 7 2 involved in cell wall biogenesis and architecture
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0117:
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL044W  YIP3 10 2 protein of unknown function
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0118:
 YLR335W  NUP2 6 2 nuclear pore protein
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0119:
 YGL175C  SAE2 3 2 meiotic recombination protein
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0120:
 YAL016W  TPD3 3 2 ser/thr protein phosphatase 2A, regulatory chain A
 YDL134C  PPH21 6 2 protein ser/thr phosphatase PP2A-1
 YOR014W  RTS1 6 2 potential regulatory subunit of protein phosphatase 2A
Cluster TH0121:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YGR218W  CRM1 38 2 nuclear export factor, exportin
 YML007W  YAP1 7 2 transcriptional activator involved in oxidative stress response
Cluster TH0122:
 YHR216W  IMD2 3 2 IMP dehydrogenase
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0123:
 YDL130W  RPP1B 14 2 60S large subunit acidic ribosomal protein L44prime
 YDR382W  RPP2B 4 2 60S large subunit acidic ribosomal protein
 YLR340W  RPP0 4 2 acidic ribosomal protein L10.e
Cluster TH0124:
 YCL019W  4 2
 YDR261W-A  4 2
 YDR261W-B  3 2
Cluster TH0125:
 YCL020W  4 2
 YDR261W-A  4 2
 YDR261W-B  3 2
Cluster TH0126:
 YJL061W  NUP82 6 2 nuclear pore protein
 YKL061W  7 2 hypothetical protein (Class V)
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0127:
 YLR423C  APG17 62 2 protein involved in authophagy
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YOR232W  MGE1 9 2 heat shock protein - chaperone
Cluster TH0128:
 YBR202W  CDC47 4 2 cell division control protein
 YLR103C  CDC45 3 2 required for minichromosome maintenance and initiation of chromosomal DNA replication
 YLR274W  CDC46 3 2 cell division control protein
Cluster TH0129:
 YBR079C  RPG1 2 2 translation initiation factor eIF3 (p110 subunit)
 YMR309C  NIP1 7 2 associated with 40s ribosomal subunit
 YOR361C  PRT1 7 2 translation initiation factor eIF3 subunit
Cluster TH0130:
 YIL033C  BCY1 6 2 cAMP dependent protein kinase, regulatory subunit
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0131:
 YGL206C  CHC1 3 2 clathrin heavy chain
 YGR167W  CLC1 5 2 clathrin light chain
 YHR161C  YAP1801 4 2 Yeast Adaptor Protein, member of AP180 protein family
Cluster TH0132:
 YDR100W  6 2 similarity to Dictyostelium development-specific membrane protein (Class III)
 YGL161C  10 2 weak similarity to TRCDSEMBL:HS167A19_1 dJ167A19.1 human (Class IV)
 YOR036W  PEP12 11 2 syntaxin (T-SNARE), vacuolar
Cluster TH0133:
 YGL040C  HEM2 3 2 porphobilinogen synthase
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0134:
 YER165W  PAB1 15 2 mRNA polyadenylate-binding protein
 YGL049C  TIF4632 3 2 mRNA cap-binding protein (eIF4F), 130K subunit
 YOL139C  CDC33 5 2 translation initiation factor eIF4E
Cluster TH0135:
 YDL014W  NOP1 3 2 fibrillarin
 YLR197W  SIK1 5 2 involved in pre-rRNA processing
 YOR310C  NOP58 3 2 required for pre-18S rRNA processing
Cluster TH0136:
 YBR017C  KAP104 10 2 beta-karyopherin
 YKL068W  NUP100 8 2 nuclear pore protein
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0137:
 YBR217W  APG12 11 2 component of the autophagic system
 YHR171W  APG7 5 2 component of the autophagic system
 YPL149W  APG5 4 2 involved in autophagy and nutrient starvation
Cluster TH0138:
 YBR217W  APG12 11 2 component of the autophagic system
 YMR159C  APG16 11 2 coiled-coil protein required for autophagy
 YPL149W  APG5 4 2 involved in autophagy and nutrient starvation
Cluster TH0139:
 YDR174W  HMO1 9 2 Non-histone protein
 YKL130C  SHE2 19 2 required for mother cell-specific expression of HO
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0140:
 YDL065C  PEX19 12 2 required for biogenesis of peroxisomes - peroxin
 YDR034C  LYS14 63 2 transcriptional activator of lysine pathway genes
 YLR063W  3 2 hypothetical protein (Class V)
Cluster TH0141:
 YGR120C  SEC35 14 2 required for ER to golgi vesicle docking
 YLR423C  APG17 62 2 protein involved in authophagy
 YMR025W  6 2 hypothetical protein (Class V)
Cluster TH0142:
 YAL005C  SSA1 4 2 heat shock protein of HSP70 family, cytosolic
 YLR310C  CDC25 8 2 GDP/GTP exchange factor for RAS1P and RAS2P
 YPL240C  HSP82 8 2 heat shock protein
Cluster TH0143:
 YDL088C  ASM4 2 2 suppressor of temperature-sensitive mutations in Pol3p
 YML031W  NDC1 4 2 nuclear envelope protein
 YMR153W  NUP53 25 2 component of the karyopherin docking complex of the nuclear pore complex
Cluster TH0144:
 YHR068W  DYS1 2 2 deoxyhypusine synthase
 YKL135C  APL2 7 2 AP-1 complex subunit, beta1-adaptin, 82 KD
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0145:
 YAL036C  FUN11 5 2 strong similarity to GTP-binding proteins (Class II)
 YCR038C  BUD5 5 2 GDP/GTP exchange factor for RSR1P/Bud1p
 YDL065C  PEX19 12 2 required for biogenesis of peroxisomes - peroxin
Cluster TH0146:
 YDL208W  NHP2 4 2 nucleolar rRNA processing protein
 YHR072W-A  NOP10 2 2 nucleolar rRNA processing protein
 YHR089C  GAR1 5 2 nucleolar rRNA processing protein
Cluster TH0147:
 YBL016W  FUS3 11 2 mitogen-activated protein kinase (MAP kinase)
 YDL159W  STE7 6 2 ser/thr/tyr protein kinase of MAP kinase kinase family
 YLR313C  SPH1 6 2 required for bipolar bud site selection
Cluster TH0148:
 YBL016W  FUS3 11 2 mitogen-activated protein kinase (MAP kinase)
 YLR313C  SPH1 6 2 required for bipolar bud site selection
 YLR362W  STE11 16 2 ser/thr protein kinase of the MEKK family
Cluster TH0149:
 YBR010W  HHT1 3 2 histone H3
 YGR116W  SPT6 4 2 transcription elongation protein
 YNL030W  HHF2 3 2 histone H4
Cluster TH0150:
 YDL102W  CDC2 2 2 DNA-directed DNA polymerase delta, catalytic 125 KD subunit
 YJR006W  HYS2 3 2 DNA-directed DNA polymerase delta, 55 KD subunit
 YJR043C  POL32 4 2 polymerase-associated gene, third (55 kDa) subunit of DNA polymerase delta
Cluster TH0151:
 YBR108W  3 2 weak similarity to R.norvegicus atrophin-1 related protein (Class III)
 YCR009C  RVS161 4 2 similarity to human amphiphysin and RVS167P (Class III)
 YDR388W  RVS167 9 2 reduced viability upon starvation protein
Cluster TH0152:
 YGL016W  KAP122 4 2 Member of the karyopherin-beta family, nuclear import
 YKL058W  TOA2 4 2 TFIIA subunit (transcription initiation factor), 13.5 kD
 YOR194C  TOA1 5 2 TFIIA subunit (transcription initiation factor), 32 kD
Cluster TH0153:
 YBR217W  APG12 11 2 component of the autophagic system
 YHR171W  APG7 5 2 component of the autophagic system
 YNR007C  AUT1 5 2 essential for autophagocytosis
Cluster TH0154:
 YBL078C  AUT7 4 2 essential for autophagy
 YHR171W  APG7 5 2 component of the autophagic system
 YNR007C  AUT1 5 2 essential for autophagocytosis
Cluster TH0155:
 YKL074C  MUD2 8 2 pre-mRNA splicing factor
 YLR116W  MSL5 18 2 branch point bridging protein
 YPL016W  SWI1 6 2 component of SWI/SNF global transcription activator complex
Cluster TH0156:
 YKL068W  NUP100 8 2 nuclear pore protein
 YLR347C  KAP95 35 2 karyopherin-beta
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0157:
 YDR259C  YAP6 23 2 transcription factor, of a fungal-specific family of bzip proteins
 YDR484W  SAC2 6 2 suppressor of actin mutation
 YLR447C  VMA6 88 2 H+-ATPase V0 domain 36 KD subunit, vacuolar
Cluster TH0158:
 YLR025W  SNF7 7 2 class E Vps protein
 YLR447C  VMA6 88 2 H+-ATPase V0 domain 36 KD subunit, vacuolar
 YMR154C  RIM13 5 2 calpain-like cysteine protease
Cluster TH0159:
 YDR508C  GNP1 4 2 high-affinity glutamine permease
 YLR373C  VID22 31 2 similarity to hypothetical protein Ygr071Cp (Class IV)
 YPR025C  CCL1 4 2 TFIIH subunit (transcription initiation factor), cyclin C component
Cluster TH0160:
 YFL039C  ACT1 22 2 actin
 YLR319C  BUD6 9 2 bud site selection protein
 YNL271C  BNI1 8 2 regulator of budding
Cluster TH0161:
 YDR264C  AKR1 10 2 ankyrin repeat-containing protein
 YJR086W  STE18 5 2 GTP-binding protein gamma subunit of the pheromone pathway
 YOR212W  STE4 12 2 GTP-binding protein beta subunit of the pheromone pathway
Cluster TH0162:
 YGL170C  SPO74 5 2 hypothetical protein (Class V)
 YGR119C  NUP57 22 2 nuclear pore protein
 YGR218W  CRM1 38 2 nuclear export factor, exportin
Cluster TH0163:
 YEL017W  12 2 hypothetical protein (Class V)
 YHR123W  EPT1 3 2 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotransferase
 YIR038C  GTT1 23 2 glutathione S-transferase
Cluster TH0164:
 YBR216C  3 2 strong similarity to hypothetical protein YGL060W (Class IV)
 YKL068W  NUP100 8 2 nuclear pore protein
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0165:
 YBL016W  FUS3 11 2 mitogen-activated protein kinase (MAP kinase)
 YDR480W  DIG2 6 2 MAP kinase-associated protein, down-regulator of invasive growth and mating
 YPL049C  DIG1 8 2 MAP kinase-associated protein, down-regulator of invasive growth and mating
Cluster TH0166:
 YDR480W  DIG2 6 2 MAP kinase-associated protein, down-regulator of invasive growth and mating
 YGR040W  KSS1 7 2 ser/thr protein kinase of the MAP kinase family
 YPL049C  DIG1 8 2 MAP kinase-associated protein, down-regulator of invasive growth and mating
Cluster TH0167:
 YGL097W  SRM1 4 2 GDP/GTP exchange factor for GSP1P/GSP2P
 YGR218W  CRM1 38 2 nuclear export factor, exportin
 YIL063C  YRB2 4 2 involved in nuclear protein export
Cluster TH0168:
 YCL054W  SPB1 3 2 required for ribosome synthesis, putative methylase
 YDL014W  NOP1 3 2 fibrillarin
 YOR310C  NOP58 3 2 required for pre-18S rRNA processing
Cluster TH0169:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YGL027C  CWH41 2 2 ER glucosidase I
 YIL022W  TIM44 5 2 mitochondrial inner membrane import receptor subunit
Cluster TH0170:
 YBR217W  APG12 11 2 component of the autophagic system
 YMR047C  NUP116 127 2 nuclear pore protein
 YNR007C  AUT1 5 2 essential for autophagocytosis
Cluster TH0171:
 YBR217W  APG12 11 2 component of the autophagic system
 YDR465C  RMT2 4 2 N-delta-arginine methyltransferase
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0172:
 YHL003C  LAG1 3 2 longevity-assurance protein
 YKL008C  LAC1 4 2 protein required with LAG1P for ER-to-Golgi transport of GPI-anchored proteins
 YMR298W  4 2 hypothetical protein (Class V)
Cluster TH0173:
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
 YIR017C  MET28 7 2 transcriptional activator of sulfur amino acid metabolism
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0174:
 YDR176W  NGG1 23 2 general transcriptional adaptor or co-activator
 YER127W  LCP5 3 2 NGG1P interacting protein
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0175:
 YDR148C  KGD2 11 2 2-oxoglutarate dehydrogenase complex E2 component
 YDR510W  SMT3 22 2 ubiquitin-like protein
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0176:
 YDR394W  RPT3 7 2 26S proteasome regulatory subunit
 YOR117W  RPT5 7 2 26S proteasome regulatory subunit
 YOR259C  RPT4 3 2 26S proteasome regulatory subunit
Cluster TH0177:
 YFL039C  ACT1 22 2 actin
 YNL271C  BNI1 8 2 regulator of budding
 YOR122C  PFY1 4 2 profilin
Cluster TH0178:
 YGR267C  FOL2 4 2 GTP cyclohydrolase I
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0179:
 YIL062C  ARC15 2 2 subunit of the ARP2/3 complex
 YJR065C  ARP3 6 2 actin related protein
 YKL013C  ARC19 3 2 subunit of the ARP2/3 complex
Cluster TH0180:
 YDL207W  GLE1 3 2 RNA export mediator
 YDR192C  NUP42 9 2 nuclear pore protein
 YMR255W  GFD1 7 2 protein of the nuclear pore complex
Cluster TH0181:
 YBR275C  RIF1 2 2 RAP1-interacting factor 1
 YLR453C  RIF2 80 2 RAP1P interacting factor 2
 YNL216W  RAP1 7 2 DNA-binding protein with repressor and activator activity
Cluster TH0182:
 YJL006C  CTK2 2 2 carboxy-terminal domain (CTD) kinase, beta subunit
 YKL139W  CTK1 2 2 carboxy-terminal domain (CTD) kinase, alpha subunit
 YML112W  CTK3 3 2 carboxy-terminal domain (CTD) kinase, gamma subunit
Cluster TH0183:
 YDR174W  HMO1 9 2 Non-histone protein
 YML015C  TAF40 5 2 TFIID subunit (TBP-associated factor), 40KD
 YML098W  TAF19 4 2 TFIID subunit (TBP-associated factor), 19 kD
Cluster TH0184:
 YGR241C  YAP1802 8 2 Yeast Adaptor Protein, member of AP180 protein family
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
 YNL092W  29 2 similarity to hypothetical C. elegans proteins Y48E1C.2 and Y48E1C.c (Class IV)
Cluster TH0185:
 YGR241C  YAP1802 8 2 Yeast Adaptor Protein, member of AP180 protein family
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
 YPR178W  PRP4 4 2 U4/U6 snRNP 52 KD protein
Cluster TH0186:
 YDL246C  6 2 strong similarity to SOR1P (Class II)
 YJR159W  SOR1 6 2 sorbitol dehydrogenase
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0187:
 YGL207W  SPT16 3 2 general chromatin factor
 YNL102W  POL1 4 2 DNA-directed DNA polymerase alpha, 180 KD subunit
 YPR135W  CTF4 3 2 DNA-directed DNA polymerase alpha-binding protein
Cluster TH0188:
 YHR114W  BZZ1 91 2 similarity to S.pombe hypothetical protein and human protein-tyrosine kinase fer (Class III)
 YJL152W  3 2 questionable ORF (Class VI)
 YOR281C  PLP2 3 2 weak similarity to phosducins
Cluster TH0189:
 YLR051C  4 2 similarity to human acidic 82 kDa protein (Class III)
 YLR119W  SRN2 2 2 suppressor of RNA1-1 mutation
 YLR288C  MEC3 82 2 G2-specific checkpoint protein
Cluster TH0190:
 YDL160C  DHH1 13 2 putative RNA helicase of the DEAD box family
 YGR092W  DBF2 7 2 ser/thr protein kinase related to DBF20P
 YNR052C  POP2 8 2 required for glucose derepression
Cluster TH0191:
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
 YOR098C  NUP1 8 2 nuclear pore protein
Cluster TH0192:
 YDL217C  TIM22 5 2 subunit of the TIM22-complex
 YJL054W  TIM54 4 2 translocase for the insertion of proteins into the mitochondrial inner membrane
 YOR297C  TIM18 3 2 component of the inner mitochondrial membrane translocation complex
Cluster TH0193:
 YDL089W  8 2 weak similarity to hypothetical protein S. pombe (Class IV)
 YLR324W  9 2 strong similarity to YGR004W (Class IV)
 YPR028W  YIP2 4 2 Ypt-interacting protein
Cluster TH0194:
 YAL032C  PRP45 7 2 pre-mRNA splicing factor
 YLR345W  7 2 similarity to PFK26P and other 6-phosphofructo-2-kinases (Class III)
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0195:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YLR453C  RIF2 80 2 RAP1P interacting factor 2
 YPL098C  2 2 similarity to S.pombe hypothetical protein (Class IV)
Cluster TH0196:
 YEL002C  WBP1 2 2 oligosaccharyl transferase beta subunit precursor
 YGL022W  STT3 3 2 oligosaccharyl transferase subunit
 YMR149W  SWP1 4 2 oligosaccharyltransferase delta subunit
Cluster TH0197:
 YDR034C  LYS14 63 2 transcriptional activator of lysine pathway genes
 YDR259C  YAP6 23 2 transcription factor, of a fungal-specific family of bzip proteins
 YKR048C  NAP1 9 2 nucleosome assembly protein I
Cluster TH0198:
 YDR034C  LYS14 63 2 transcriptional activator of lysine pathway genes
 YDR259C  YAP6 23 2 transcription factor, of a fungal-specific family of bzip proteins
 YGL181W  GTS1 23 2 transcription factor of the GCS1P/GLO3P/SPS18P family
Cluster TH0199:
 YER148W  SPT15 10 2 the TATA-binding protein TBP
 YKL058W  TOA2 4 2 TFIIA subunit (transcription initiation factor), 13.5 kD
 YOR194C  TOA1 5 2 TFIIA subunit (transcription initiation factor), 32 kD
Cluster TH0200:
 YCR087C-A  5 2 similarity to S. pombe SPBC215.06c putative nucleic acid-binding protein (Class III)
 YDR510W  SMT3 22 2 ubiquitin-like protein
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
Cluster TH0201:
 YIR038C  GTT1 23 2 glutathione S-transferase
 YJL097W  3 2 similarity to hypothetical C. elegans protein T15B7.2 (Class IV)
 YML121W  GTR1 9 2 GTP-binding protein
Cluster TH0202:
 YCR052W  RSC6 5 2 subunit of the RSC complex
 YFR037C  RSC8 8 2 subunit of the RSC complex
 YLR321C  SFH1 9 2 subunit of the RSC complex
Cluster TH0203:
 YBL014C  RRN6 4 2 RNA polymerase I specific transcription initiation factor
 YJL025W  RRN7 2 2 polymerase I specific transcription initiation factor
 YML043C  RRN11 3 2 RNA polymerase I specific transcription initiation factor
Cluster TH0204:
 YDL239C  ADY3 31 2 hypothetical protein (Class V)
 YOR284W  10 2 weak similarity to M.jannaschii hypothetical protein MJ0694 (Class IV)
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0205:
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YOR284W  10 2 weak similarity to M.jannaschii hypothetical protein MJ0694 (Class IV)
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0206:
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
 YLL065W  GIN11 3 2 strong similarity to YJR162C, YNR077C, YKL225W and other subtelomeric encoded proteins (Class IV)
Cluster TH0207:
 YBR270C  20 2 strong similarity to hypothetical protein YJL058C (Class IV)
 YLR423C  APG17 62 2 protein involved in authophagy
 YPL124W  NIP29 14 2 nuclear import protein
Cluster TH0208:
 YDL239C  ADY3 31 2 hypothetical protein (Class V)
 YLR423C  APG17 62 2 protein involved in authophagy
 YPL124W  NIP29 14 2 nuclear import protein
Cluster TH0209:
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YLR423C  APG17 62 2 protein involved in authophagy
 YPL124W  NIP29 14 2 nuclear import protein
Cluster TH0210:
 YLR423C  APG17 62 2 protein involved in authophagy
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL124W  NIP29 14 2 nuclear import protein
Cluster TH0211:
 YCR072C  2 2 strong similarity to S. pombe trp-asp repeat containing protein (Class II)
 YER081W  SER3 95 2 3-phosphoglycerate dehydrogenase
 YGL181W  GTS1 23 2 transcription factor of the GCS1P/GLO3P/SPS18P family
Cluster TH0212:
 YBR143C  SUP45 4 2 translational release factor
 YDR172W  SUP35 5 2 eukaryotic peptide chain release factor GTP-binding subunit
 YMR080C  NAM7 9 2 nonsense-mediated mRNA decay protein
Cluster TH0213:
 YGR136W  6 2 weak similarity to chicken growth factor receptor-binding protein GRB2 homolog (Class III)
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
 YPL111W  CAR1 6 2 arginase
Cluster TH0214:
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
 YPL111W  CAR1 6 2 arginase
Cluster TH0215:
 YFR015C  GSY1 6 2 UDP glucose--starch glucosyltransferase, isoform 1
 YJL137C  GLG2 3 2 self-glucosylating initiator of glycogen synthesis
 YLR258W  GSY2 5 2 UDP-glucose--starch glucosyltransferase, isoform 2
Cluster TH0216:
 YBR027C  4 2 hypothetical protein (Class V)
 YLR353W  BUD8 2 2 budding protein
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0217:
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YOR284W  10 2 weak similarity to M.jannaschii hypothetical protein MJ0694 (Class IV)
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0218:
 YDR078C  5 2 hypothetical protein (Class V)
 YHL006C  SHU1 7 2 hypothetical protein (Class V)
 YLR376C  4 2 hypothetical protein (Class V)
Cluster TH0219:
 YDL246C  6 2 strong similarity to SOR1P (Class II)
 YJR159W  SOR1 6 2 sorbitol dehydrogenase
 YPL031C  PHO85 14 2 cyclin-dependent protein kinase
Cluster TH0220:
 YER092W  IES5 4 2 weak similarity to tryptophan synthase beta subunit - Aquifex aeolicus (Class III)
 YKL002W  DID4 41 2 class E vacuolar-protein sorting and endocytosis factor
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0221:
 YFR008W  7 2 weak similarity to human centromere protein E (Class III)
 YJL061W  NUP82 6 2 nuclear pore protein
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0222:
 YLR321C  SFH1 9 2 subunit of the RSC complex
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0223:
 YDR308C  SRB7 4 2 DNA-directed RNA polymerase II holoenzyme and kornberg's mediator (SRB) subcomplex subunit
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
 YOL135C  MED7 9 2 member of RNA Polymerase II transcriptional regulation mediator complex
Cluster TH0224:
 YDR308C  SRB7 4 2 DNA-directed RNA polymerase II holoenzyme and kornberg's mediator (SRB) subcomplex subunit
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
 YOR174W  MED4 11 2 transcription regulation mediator
Cluster TH0225:
 YBR135W  CKS1 10 2 cyclin-dependent kinases regulatory subunit
 YBR160W  CDC28 14 2 cyclin-dependent protein kinase
 YLR210W  CLB4 4 2 cyclin, G2/M-specific
Cluster TH0226:
 YBR135W  CKS1 10 2 cyclin-dependent kinases regulatory subunit
 YBR160W  CDC28 14 2 cyclin-dependent protein kinase
 YPL256C  CLN2 3 2 cyclin, G1/S-specific
Cluster TH0227:
 YBR135W  CKS1 10 2 cyclin-dependent kinases regulatory subunit
 YBR160W  CDC28 14 2 cyclin-dependent protein kinase
 YDL155W  CLB3 5 2 cyclin, G2/M-specific
Cluster TH0228:
 YBR135W  CKS1 10 2 cyclin-dependent kinases regulatory subunit
 YBR160W  CDC28 14 2 cyclin-dependent protein kinase
 YPR119W  CLB2 12 2 cyclin, G2/M-specific
Cluster TH0229:
 YGR092W  DBF2 7 2 ser/thr protein kinase related to DBF20P
 YIL106W  MOB1 9 2 required for completion of mitosis and maintenance of ploidy
 YNR052C  POP2 8 2 required for glucose derepression
Cluster TH0230:
 YGR172C  YIP1 16 2 golgi membrane protein
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
 YLR324W  9 2 strong similarity to YGR004W (Class IV)
Cluster TH0231:
 YIL004C  BET1 4 2 protein transport protein
 YIL109C  SEC24 7 2 component of COPII coat of ER-Golgi vesicles
 YPR181C  SEC23 9 2 component of COPII coat of ER-golgi vesicles
Cluster TH0232:
 YBR135W  CKS1 10 2 cyclin-dependent kinases regulatory subunit
 YBR160W  CDC28 14 2 cyclin-dependent protein kinase
 YGR108W  CLB1 3 2 cyclin, G2/M-specific
Cluster TH0233:
 YGL200C  EMP24 4 2 component of the COPII-coated vesicles, 24 kDa
 YIL109C  SEC24 7 2 component of COPII coat of ER-Golgi vesicles
 YPR181C  SEC23 9 2 component of COPII coat of ER-golgi vesicles
Cluster TH0234:
 YEL066W  HPA3 6 2 histone and other protein acetyltransferase
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0235:
 YLR295C  ATP14 124 2 F1F0-ATPase complex, subunit h
 YLR455W  2 2 weak similarity to human G/T mismatch binding protein (Class III)
 YPR086W  SUA7 100 2 TFIIB subunit (transcription initiation factor), factor E
Cluster TH0236:
 YDL081C  RPP1A 8 2 60S large subunit acidic ribosomal protein a1
 YLR295C  ATP14 124 2 F1F0-ATPase complex, subunit h
 YPR086W  SUA7 100 2 TFIIB subunit (transcription initiation factor), factor E
Cluster TH0237:
 YLR295C  ATP14 124 2 F1F0-ATPase complex, subunit h
 YMR039C  SUB1 5 2 transcriptional coactivator
 YPR086W  SUA7 100 2 TFIIB subunit (transcription initiation factor), factor E
Cluster TH0238:
 YBR193C  MED8 13 2 transcriptional regulation mediator
 YLR295C  ATP14 124 2 F1F0-ATPase complex, subunit h
 YPR086W  SUA7 100 2 TFIIB subunit (transcription initiation factor), factor E
Cluster TH0239:
 YDR477W  SNF1 10 2 carbon catabolite derepressing ser/thr protein kinase
 YER027C  GAL83 3 2 glucose repression protein
 YGL115W  SNF4 10 2 nuclear regulatory protein
Cluster TH0240:
 YDR422C  SIP1 7 2 multicopy suppressor of SNF1
 YDR477W  SNF1 10 2 carbon catabolite derepressing ser/thr protein kinase
 YGL115W  SNF4 10 2 nuclear regulatory protein
Cluster TH0241:
 YCL029C  BIK1 3 2 nuclear fusion protein
 YER016W  BIM1 4 2 binding to microtubules
 YML085C  TUB1 5 2 alpha-1 tubulin
Cluster TH0242:
 YHL019C  APM2 4 2 involved in clathrin-independent transport processes
 YKL135C  APL2 7 2 AP-1 complex subunit, beta1-adaptin, 82 KD
 YPR029C  APL4 5 2 AP-1 complex subunit, gamma-adaptin, 94 KD
Cluster TH0243:
 YDR207C  UME6 8 2 negative transcriptional regulator
 YJR094C  IME1 3 2 transcription factor required for sporulation
 YMR139W  RIM11 6 2 ser/thr protein kinase
Cluster TH0244:
 YAL030W  SNC1 4 2 synaptic vesicle-associated membrane protein
 YGR009C  SEC9 10 2 protein transport protein
 YPL232W  SSO1 2 2 syntaxin-related protein
Cluster TH0245:
 YAL030W  SNC1 4 2 synaptic vesicle-associated membrane protein
 YBL050W  SEC17 11 2 transport vesicle fusion protein
 YGR009C  SEC9 10 2 protein transport protein
Cluster TH0246:
 YFR047C  4 2 strong similarity to human quinolinate phosphoribosyltransferase (Class II)
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0247:
 YLL021W  SPA2 7 2 involved in cell polarity
 YLR319C  BUD6 9 2 bud site selection protein
 YLR362W  STE11 16 2 ser/thr protein kinase of the MEKK family
Cluster TH0248:
 YDL239C  ADY3 31 2 hypothetical protein (Class V)
 YLR423C  APG17 62 2 protein involved in authophagy
 YMR124W  4 2 weak similarity to YLR031W (Class IV)
Cluster TH0249:
 YLR423C  APG17 62 2 protein involved in authophagy
 YOR164C  5 2 similarity to conserved hypothetical protein S. pombe (Class IV)
 YPR105C  11 2 similarity to hypothetical protein SPCC338.13 S. pombe (Class IV)
Cluster TH0250:
 YDR480W  DIG2 6 2 MAP kinase-associated protein, down-regulator of invasive growth and mating
 YHR084W  STE12 2 2 transcriptional activator
 YPL049C  DIG1 8 2 MAP kinase-associated protein, down-regulator of invasive growth and mating
Cluster TH0251:
 YGR120C  SEC35 14 2 required for ER to golgi vesicle docking
 YNL086W  9 2 hypothetical protein (Class V)
 YPR185W  APG13 6 2 protein required for the autophagic process
Cluster TH0252:
 YLR025W  SNF7 7 2 class E Vps protein
 YOR275C  3 2 similarity to A.nidulans palA protein (Class III)
 YPR173C  VPS4 4 2 vacuolar sorting protein
Cluster TH0253:
 YBR176W  ECM31 7 2 involved in cell wall biogenesis and architecture
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0254:
 YBL045C  COR1 3 2 ubiquinol--cytochrome-c reductase 44K core protein
 YLR090W  XDJ1 4 2 similarity to E.coli dnaJ (Class III)
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0255:
 YKL103C  LAP4 10 2 aminopeptidase yscI precursor, vacuolar
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
 YOL082W  CVT19 18 2 similarity to YOL083W (Class IV)
Cluster TH0256:
 YGR004W  3 2 strong similarity to hypothetical protein YLR324W (Class IV)
 YLR324W  9 2 strong similarity to YGR004W (Class IV)
 YPR028W  YIP2 4 2 Ypt-interacting protein
Cluster TH0257:
 YBR176W  ECM31 7 2 involved in cell wall biogenesis and architecture
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0258:
 YDR307W  4 2 similarity to PMT1P, PMT2P, PMT3P and PMT5P (Class III)
 YER081W  SER3 95 2 3-phosphoglycerate dehydrogenase
 YER145C  FTR1 4 2 iron permease that mediates high-affinity iron uptake
Cluster TH0259:
 YJR102C  VPS25 5 2 weak similarity to hypothetical protein D. melanogaster (Class IV)
 YLR417W  VPS36 3 2 defective in vacuolar protein sorting
 YMR077C  VPS20 4 2 similarity to SNF7 protein (Class III)
Cluster TH0260:
 YDR429C  TIF35 6 2 translation initiation factor eIF3 (p33 subunit)
 YMR146C  TIF34 4 2 translation initiation factor eIF3, p39 subunit
 YOR361C  PRT1 7 2 translation initiation factor eIF3 subunit
Cluster TH0261:
 YMR146C  TIF34 4 2 translation initiation factor eIF3, p39 subunit
 YMR309C  NIP1 7 2 associated with 40s ribosomal subunit
 YOR361C  PRT1 7 2 translation initiation factor eIF3 subunit
Cluster TH0262:
 YJL110C  GZF3 5 2 transcriptional repressor
 YKR034W  DAL80 6 2 transcriptional repressor for allantoin and GABA catabolic genes
 YNL021W  HDA1 3 2 histone deacetylase A
Cluster TH0263:
 YJL199C  11 2 hypothetical protein (Class V)
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0264:
 YLR288C  MEC3 82 2 G2-specific checkpoint protein
 YOR368W  RAD17 3 2 DNA damage checkpoint control protein
 YPL194W  DDC1 3 2 DNA damage checkpoint protein
Cluster TH0265:
 YNL151C  RPC31 2 2 DNA-directed RNA polymerase III, 31 KD subunit
 YNR003C  RPC34 4 2 DNA-directed RNA polymerase III, 34 KD subunit
 YPR190C  RPC82 2 2 DNA-directed RNA polymerase III, 82 KD subunit
Cluster TH0266:
 YBR234C  ARC40 2 2 ARP2/3 protein complex subunit, 40 kilodalton
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YLR453C  RIF2 80 2 RAP1P interacting factor 2
Cluster TH0267:
 YDL013W  HEX3 6 2 hexose metabolism-related protein
 YDR510W  SMT3 22 2 ubiquitin-like protein
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
Cluster TH0268:
 YJL199C  11 2 hypothetical protein (Class V)
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0269:
 YDL003W  MCD1 2 2 Mitotic Chromosome Determinant
 YFL008W  SMC1 6 2 chromosome segregation protein
 YJL074C  SMC3 3 2 required for structural maintenance of chromosomes
Cluster TH0270:
 YDL195W  SEC31 4 2 component of the COPII coat of ER-golgi vesicles
 YPL085W  SEC16 3 2 multidomain vesicle coat protein
 YPR181C  SEC23 9 2 component of COPII coat of ER-golgi vesicles
Cluster TH0271:
 YER063W  THO1 7 2 weak similarity to human heterogeneous ribonuclear particle protein U (Class III)
 YGL181W  GTS1 23 2 transcription factor of the GCS1P/GLO3P/SPS18P family
 YOR333C  2 2 questionable ORF (Class VI)
Cluster TH0272:
 YEL017W  12 2 hypothetical protein (Class V)
 YGR121C  MEP1 2 2 ammonia permease of high capacity and moderate affinity
 YIR038C  GTT1 23 2 glutathione S-transferase
Cluster TH0273:
 YEL015W  12 2 weak similarity to SPA2P (Class III)
 YOL149W  DCP1 21 2 mRNA decapping enzyme
 YOR167C  RPS28A 14 2 40S small subunit ribosomal protein S28.e.c15
Cluster TH0274:
 YEL015W  12 2 weak similarity to SPA2P (Class III)
 YJR022W  LSM8 28 2 splicing factor
 YOR167C  RPS28A 14 2 40S small subunit ribosomal protein S28.e.c15
Cluster TH0275:
 YFL008W  SMC1 6 2 chromosome segregation protein
 YFR031C  SMC2 3 2 chromosome segregation protein
 YOL115W  TRF4 6 2 topoisomerase I-related protein
Cluster TH0276:
 YFL037W  TUB2 4 2 beta-tubulin
 YML085C  TUB1 5 2 alpha-1 tubulin
 YNL223W  AUT2 3 2 essential for autophagy
Cluster TH0277:
 YIR017C  MET28 7 2 transcriptional activator of sulfur amino acid metabolism
 YJR060W  CBF1 2 2 kinetochore protein
 YNL103W  MET4 3 2 transcriptional activator of sulfur metabolism
Cluster TH0278:
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YNL044W  YIP3 10 2 protein of unknown function
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0279:
 YDR256C  CTA1 4 2 catalase A, peroxisomal
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0280:
 YEL068C  5 2 hypothetical protein (Class V)
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
 YKL002W  DID4 41 2 class E vacuolar-protein sorting and endocytosis factor
Cluster TH0281:
 YGL229C  SAP4 10 2 SIT4P-associated protein
 YMR047C  NUP116 127 2 nuclear pore protein
 YOR062C  2 2 strong similarity to YKR075C (Class IV)
Cluster TH0282:
 YDR148C  KGD2 11 2 2-oxoglutarate dehydrogenase complex E2 component
 YDR510W  SMT3 22 2 ubiquitin-like protein
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0283:
 YBL001C  ECM15 4 2 involved in cell wall biogenesis and architecture
 YDR510W  SMT3 22 2 ubiquitin-like protein
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0284:
 YBR045C  GIP1 8 2 GLC7-interacting protein
 YER133W  GLC7 17 2 ser/thr phosphoprotein phosphatase 1, catalytic chain
 YOR329C  SCD5 5 2 suppressor of clathrin deficiency
Cluster TH0285:
 YBR045C  GIP1 8 2 GLC7-interacting protein
 YER133W  GLC7 17 2 ser/thr phosphoprotein phosphatase 1, catalytic chain
 YLR263W  RED1 5 2 meiosis-specific protein
Cluster TH0286:
 YBR045C  GIP1 8 2 GLC7-interacting protein
 YER133W  GLC7 17 2 ser/thr phosphoprotein phosphatase 1, catalytic chain
 YOR178C  GAC1 5 2 ser/thr phosphoprotein phosphatase 1, regulatory chain
Cluster TH0287:
 YLR284C  ECI1 5 2 delta3-cis-delta2-trans-enoyl-CoA isomerase
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YOR180C  DCI1 6 2 Enoyl-CoA Hydratase, peroxisomal
Cluster TH0288:
 YBL023C  MCM2 4 2 member of the MCM2P,MCM3P,CDC46P family
 YDL017W  CDC7 13 2 protein kinase
 YDR052C  DBF4 5 2 regulatory subunit for CDC7P protein kinase
Cluster TH0289:
 YGL207W  SPT16 3 2 general chromatin factor
 YML069W  POB3 3 2 protein that binds to DNA polymerase I (PolI)
 YNL102W  POL1 4 2 DNA-directed DNA polymerase alpha, 180 KD subunit
Cluster TH0290:
 YGR116W  SPT6 4 2 transcription elongation protein
 YNL030W  HHF2 3 2 histone H4
 YNL031C  HHT2 3 2 histone H3
Cluster TH0291:
 YIL005W  2 2 similarity to protein disulfide isomerases (Class III)
 YLR295C  ATP14 124 2 F1F0-ATPase complex, subunit h
 YPR086W  SUA7 100 2 TFIIB subunit (transcription initiation factor), factor E
Cluster TH0292:
 YGR144W  THI4 6 2 involved in thiamine biosynthesis and DNA repair
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0293:
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
 YNL331C  AAD14 5 2 strong similarity aryl-alcohol reductase (Class II)
Cluster TH0294:
 YJL057C  IKS1 3 2 weak similarity to human P1/eIF-2a protein kinase (Class III)
 YMR129W  POM152 3 2 nuclear pore membrane glycoprotein
 YMR153W  NUP53 25 2 component of the karyopherin docking complex of the nuclear pore complex
Cluster TH0295:
 YBR172C  SMY2 2 2 kinesin-related protein
 YKL074C  MUD2 8 2 pre-mRNA splicing factor
 YLR116W  MSL5 18 2 branch point bridging protein
Cluster TH0296:
 YHR114W  BZZ1 91 2 similarity to S.pombe hypothetical protein and human protein-tyrosine kinase fer (Class III)
 YIL132C  CSM2 7 2 hypothetical protein (Class V)
 YML092C  PRE8 14 2 20S proteasome subunit Y7 (alpha2)
Cluster TH0297:
 YFR037C  RSC8 8 2 subunit of the RSC complex
 YIL126W  STH1 2 2 subunit of the RSC complex
 YLR321C  SFH1 9 2 subunit of the RSC complex
Cluster TH0298:
 YER023W  PRO3 5 2 delta 1-pyrroline-5-carboxylate reductase
 YLR347C  KAP95 35 2 karyopherin-beta
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0299:
 YBR270C  20 2 strong similarity to hypothetical protein YJL058C (Class IV)
 YKR026C  GCN3 15 2 translation initiation factor eIF2B, 34 KD, alpha subunit
 YOR047C  STD1 31 2 dosage-dependent modulator of glucose repression
Cluster TH0300:
 YDR311W  TFB1 24 2 TFIIH subunit (transcription initiation factor), 75 kD
 YGR120C  SEC35 14 2 required for ER to golgi vesicle docking
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0301:
 YDR167W  TAF25 22 2 TFIID and SAGA subunit
 YJR091C  JSN1 289 2 suppresses the high-temperature lethality of TUB2-150
 YML015C  TAF40 5 2 TFIID subunit (TBP-associated factor), 40KD
Cluster TH0302:
 YBR009C  HHF1 3 2 histone H4
 YBR010W  HHT1 3 2 histone H3
 YGR116W  SPT6 4 2 transcription elongation protein
Cluster TH0303:
 YBR009C  HHF1 3 2 histone H4
 YGR116W  SPT6 4 2 transcription elongation protein
 YNL031C  HHT2 3 2 histone H3
Cluster TH0304:
 YHR129C  ARP1 6 2 centractin
 YMR294W  JNM1 12 2 mitosis protein, involved in nuclear migration
 YPL174C  NIP100 8 2 component of the dynactin complex
Cluster TH0305:
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
 YNR010W  CSE2 2 2 subunit of RNA polymerase II mediator complex
 YOR174W  MED4 11 2 transcription regulation mediator
Cluster TH0306:
 YBR216C  3 2 strong similarity to hypothetical protein YGL060W (Class IV)
 YML007W  YAP1 7 2 transcriptional activator involved in oxidative stress response
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0307:
 YLR347C  KAP95 35 2 karyopherin-beta
 YML007W  YAP1 7 2 transcriptional activator involved in oxidative stress response
 YMR047C  NUP116 127 2 nuclear pore protein
Cluster TH0308:
 YGR163W  GTR2 2 2 similarity to human ragA protein and GTR1P (Class III)
 YKR007W  4 2 weak similarity to Streptococcus protein M5 precursor (Class IV)
 YML121W  GTR1 9 2 GTP-binding protein
Cluster TH0309:
 YHL018W  5 2 similarity to human pterin-4-alpha-carbinolamine dehydratase (Class III)
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YPL070W  30 2 weak similarity to VPS9P (Class III)
Cluster TH0310:
 YLR319C  BUD6 9 2 bud site selection protein
 YLR362W  STE11 16 2 ser/thr protein kinase of the MEKK family
 YMR186W  HSC82 5 2 heat shock protein
Cluster TH0311:
 YGR010W  6 2 strong similarity to hypothetical protein YLR328W (Class IV)
 YLR328W  7 2 strong similarity to YGR010W (Class IV)
 YLR438W  CAR2 4 2 ornithine aminotransferase
Cluster TH0312:
 YGR035C  4 2 hypothetical protein (Class V)
 YKL002W  DID4 41 2 class E vacuolar-protein sorting and endocytosis factor
 YLR295C  ATP14 124 2 F1F0-ATPase complex, subunit h
Cluster TH0313:
 YKL074C  MUD2 8 2 pre-mRNA splicing factor
 YLR116W  MSL5 18 2 branch point bridging protein
 YPL105C  5 2 similarity to SMY2P (Class III)
Cluster TH0314:
 YDL246C  6 2 strong similarity to SOR1P (Class II)
 YJR037W  3 2 questionable ORF (Class VI)
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0315:
 YDL246C  6 2 strong similarity to SOR1P (Class II)
 YJR159W  SOR1 6 2 sorbitol dehydrogenase
 YMR308C  PSE1 12 2 beta karyopherin
Cluster TH0316:
 YFL008W  SMC1 6 2 chromosome segregation protein
 YFR031C  SMC2 3 2 chromosome segregation protein
 YIL144W  TID3 17 2 DMC1P interacting protein
Cluster TH0317:
 YGL206C  CHC1 3 2 clathrin heavy chain
 YGR167W  CLC1 5 2 clathrin light chain
 YGR241C  YAP1802 8 2 Yeast Adaptor Protein, member of AP180 protein family
Cluster TH0318:
 YJL128C  PBS2 4 2 tyrosine protein kinase of the MAP kinase kinase family
 YLR113W  HOG1 5 2 ser/thr protein kinase of MAP kinase (MAPK) family
 YLR362W  STE11 16 2 ser/thr protein kinase of the MEKK family
Cluster TH0319:
 YDR227W  SIR4 6 2 silencing regulatory and DNA-repair protein
 YLR442C  SIR3 2 2 silencing regulatory and DNA-repair protein
 YNL216W  RAP1 7 2 DNA-binding protein with repressor and activator activity
Cluster TH0320:
 YLL016W  SDC25 3 2 GDP/GTP exchange factor (GEF)
 YLR310C  CDC25 8 2 GDP/GTP exchange factor for RAS1P and RAS2P
 YNL098C  RAS2 3 2 GTP-binding protein
Cluster TH0321:
 YLL016W  SDC25 3 2 GDP/GTP exchange factor (GEF)
 YLR310C  CDC25 8 2 GDP/GTP exchange factor for RAS1P and RAS2P
 YOR101W  RAS1 4 2 GTP-binding protein
Cluster TH0322:
 YBR087W  RFC5 3 2 DNA replication factor C, 40 KD subunit
 YER173W  RAD24 2 2 cell cycle checkpoint protein
 YJR068W  RFC2 2 2 DNA replication factor C, 41 KD subunit
Cluster TH0323:
 YML064C  TEM1 73 2 GTP-binding protein of the RAS superfamily
 YPL070W  30 2 weak similarity to VPS9P (Class III)
 YPR193C  HPA2 4 2 Histone and other Protein Acetyltransferase
Cluster TH0324:
 YGR010W  6 2 strong similarity to hypothetical protein YLR328W (Class IV)
 YLR328W  7 2 strong similarity to YGR010W (Class IV)
 YNL189W  SRP1 140 2 karyopherin-alpha or importin
Cluster TH0325:
 YDR477W  SNF1 10 2 carbon catabolite derepressing ser/thr protein kinase
 YGL115W  SNF4 10 2 nuclear regulatory protein
 YGL208W  SIP2 2 2 dominant suppressor of some ts mutations in RPO21 and PRP4
Cluster TH0326:
 YDR259C  YAP6 23 2 transcription factor, of a fungal-specific family of bzip proteins
 YER022W  SRB4 101 2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
Cluster TH0327:
 YDR259C  YAP6 23 2 transcription factor, of a fungal-specific family of bzip proteins
 YGL127C  SOH1 69 2 allows HPR1 null mutant to grow at 37 deg.
 YLR423C  APG17 62 2 protein involved in authophagy
Cluster TH0328:
 YDR311W  TFB1 24 2 TFIIH subunit (transcription initiation factor), 75 kD
 YKL103C  LAP4 10 2 aminopeptidase yscI precursor, vacuolar
 YOL082W  CVT19 18 2 similarity to YOL083W (Class IV)
Cluster TH0329:
 YDR311W  TFB1 24 2 TFIIH subunit (transcription initiation factor), 75 kD
 YHR113W  4 2 similarity to vacuolar aminopeptidase Ape1p (Class III)
 YOL082W  CVT19 18 2 similarity to YOL083W (Class IV)
Cluster TH0330:
 YGR191W  HIP1 5 2 histidine permease
 YIL109C  SEC24 7 2 component of COPII coat of ER-Golgi vesicles
 YPR181C  SEC23 9 2 component of COPII coat of ER-golgi vesicles
Cluster TH0331:
 YMR309C  NIP1 7 2 associated with 40s ribosomal subunit
 YOR361C  PRT1 7 2 translation initiation factor eIF3 subunit
 YPR041W  TIF5 3 2 translation initiation factor eIF5