Cluster BI0063:
Q-value = 0.36 log10(P) = -19.52 log10(E) = 6.30 log10(Pevd) = -1.32
 YLR314C  CDC3 5 4 cell division control protein
 YCR002C  CDC10 6 4 cell division control protein
 YCR053W  THR4 0 0 threonine synthase (o-p-homoserine p-lyase)
 YJR076C  CDC11 6 4 septin
 YDR158W  HOM2 1 0 aspartate-semialdehyde dehydrogenase
 YHR107C  CDC12 9 4 septin
 YLR027C  AAT2 0 0 aspartate aminotransferase, cytosolic
 YDL225W  SHS1 5 4 septin
Cluster BI0072:
Q-value = 0.33 log10(P) = -4.30 log10(E) = 7.78 log10(Pevd) = 0.00
 YLR293C  GSP1 12 1 GTP-binding protein of the ras superfamily
 YJR074W  MOG1 2 2 GSP1-interacting protein
 YOR185C  GSP2 2 1 GTP-binding protein of the RAS superfamily
 YDR002W  YRB1 1 0 ran-specific GTPase-activating protein
Cluster BI0088:
Q-value = 0.29 log10(P) = -12.23 log10(E) = 3.53 log10(Pevd) = -0.02
 YJR076C  CDC11 6 3 septin
 YHR107C  CDC12 9 3 septin
 YGR162W  TIF4631 6 0 mRNA cap-binding protein (eIF4F), 150K subunit
 YGL049C  TIF4632 3 0 mRNA cap-binding protein (eIF4F), 130K subunit
 YCL043C  PDI1 2 0 protein disulfide-isomerase precursor
 YLR314C  CDC3 5 3 cell division control protein
 YCR002C  CDC10 6 3 cell division control protein
Cluster BI0093:
Q-value = 0.33 log10(P) = -4.15 log10(E) = 9.69 log10(Pevd) = 0.00
 YMR199W  CLN1 5 1 cyclin, G1/S-specific
 YBR135W  CKS1 10 1 cyclin-dependent kinases regulatory subunit
 YBR160W  CDC28 14 2 cyclin-dependent protein kinase
 YMR105C  PGM2 0 0 phosphoglucomutase, major isoform
Cluster BI0099:
Q-value = 0.40 log10(P) = -12.15 log10(E) = 1.67 log10(Pevd) = -0.52
 YCR002C  CDC10 6 3 cell division control protein
 YJR076C  CDC11 6 3 septin
 YGL105W  ARC1 2 0 protein with specific affinity for G4 quadruplex nucleic acids
 YHR107C  CDC12 9 3 septin
 YLR314C  CDC3 5 3 cell division control protein
 YFL018C  LPD1 5 0 dihydrolipoamide dehydrogenase precursor
Cluster BI0107:
Q-value = 0.30 log10(P) = -6.28 log10(E) = 10.66 log10(Pevd) = -0.00
 YBR017C  KAP104 10 2 beta-karyopherin
 YBR247C  ENP1 0 0 effects N-glycosylation
 YGL122C  NAB2 8 2 nuclear poly(A)-binding protein
 YOL123W  HRP1 5 2 CF Ib (RNA3' Cleavage factor Ib)
 YNL035C  0 0 similarity to hypothetical protein S. pombe (Class IV)
Cluster BI0205:
Q-value = 0.29 log10(P) = -12.90 log10(E) = 10.02 log10(Pevd) = -0.02
 YJR076C  CDC11 6 3 septin
 YCR002C  CDC10 6 3 cell division control protein
 YMR012W  CLU1 0 0 translation initiation factor eIF3 (p135 subunit)
 YHR107C  CDC12 9 3 septin
 YNL088W  TOP2 8 0 DNA topoisomerase II (ATP-hydrolysing)
 YLR314C  CDC3 5 3 cell division control protein
 YHR027C  RPN1 0 0 26S proteasome regulatory subunit
Cluster BI0257:
Q-value = 0.50 log10(P) = -5.29 log10(E) = 5.07 log10(Pevd) = -0.11
 YLR293C  GSP1 12 2 GTP-binding protein of the ras superfamily
 YLR347C  KAP95 35 1 karyopherin-beta
 YOR185C  GSP2 2 1 GTP-binding protein of the RAS superfamily
 YJR074W  MOG1 2 2 GSP1-interacting protein
Cluster BI0261:
Q-value = 0.40 log10(P) = -7.50 log10(E) = 4.33 log10(Pevd) = -0.05
 YIL046W  MET30 12 3 involved in regulation of sulfur assimilation genes and cell cycle progression
 YDL132W  CDC53 13 2 controls G1/S transition
 YNL103W  MET4 3 1 transcriptional activator of sulfur metabolism
 YLL039C  UBI4 2 0 ubiquitin
 YDR328C  SKP1 17 2 kinetochore protein complex CBF3, subunit D
Cluster BI0275:
Q-value = 0.40 log10(P) = -8.64 log10(E) = 3.97 log10(Pevd) = -0.05
 YNL244C  SUI1 3 1 translation initiation factor 3 (eIF3)
 YMR309C  NIP1 7 3 associated with 40s ribosomal subunit
 YMR146C  TIF34 4 2 translation initiation factor eIF3, p39 subunit
 YBR079C  RPG1 2 1 translation initiation factor eIF3 (p110 subunit)
 YDR429C  TIF35 6 1 translation initiation factor eIF3 (p33 subunit)
Cluster BI0322:
Q-value = 0.30 log10(P) = -6.50 log10(E) = 10.44 log10(Pevd) = -0.00
 YDR477W  SNF1 10 2 carbon catabolite derepressing ser/thr protein kinase
 YGL115W  SNF4 10 2 nuclear regulatory protein
 YMR086W  0 0 similarity to YKL105C (Class IV)
 YDR170C  SEC7 1 0 component of non-clathrin vesicle coat
 YGL208W  SIP2 2 2 dominant suppressor of some ts mutations in RPO21 and PRP4
Cluster BI0359:
Q-value = 1.00 log10(P) = -14.55 log10(E) = -3.39 log10(Pevd) = -6.42
 YCR002C  CDC10 6 4 cell division control protein
 YJR076C  CDC11 6 4 septin
 YHR107C  CDC12 9 4 septin
 YLR314C  CDC3 5 4 cell division control protein
 YDL225W  SHS1 5 4 septin
Cluster BI0382:
Q-value = 0.33 log10(P) = -2.11 log10(E) = 6.53 log10(Pevd) = 0.00
 YIL113W  2 1 strong similarity to dual-specificity phosphatase MSG5P (Class II)
 YIL113W  2 1 strong similarity to dual-specificity phosphatase MSG5P (Class II)
 YHR030C  SLT2 11 1 ser/thr protein kinase of MAP kinase family
 YNL138W  SRV2 3 0 adenylate cyclase-associated protein, 70kDa
Cluster BI0386:
Q-value = 0.30 log10(P) = -6.49 log10(E) = 7.12 log10(Pevd) = -0.00
 YFL038C  YPT1 10 1 GTP-binding protein of the rab family
 YOR370C  MRS6 1 0 geranylgeranyltransferase regulatory subunit
 YPR017C  DSS4 4 2 GDP/GTP exchange factor for SEC4P
 YFL005W  SEC4 3 2 GTP-binding protein of the ras superfamily
 YER136W  GDI1 4 1 GDP dissociation inhibitor
Cluster BI0390:
Q-value = 0.33 log10(P) = -2.19 log10(E) = 8.44 log10(Pevd) = 0.00
 YGR173W  4 1 strong similarity to human GTP-binding protein (Class II)
 YGR173W  4 1 strong similarity to human GTP-binding protein (Class II)
 YDR152W  3 1 weak similarity to C.elegans hypothetical protein CET26E3 (Class IV)
 YKL085W  MDH1 0 0 malate dehydrogenase precursor, mitochondrial
Cluster BI0406:
Q-value = 0.50 log10(P) = -5.13 log10(E) = 2.59 log10(Pevd) = -0.11
 YIL046W  MET30 12 2 involved in regulation of sulfur assimilation genes and cell cycle progression
 YDR328C  SKP1 17 2 kinetochore protein complex CBF3, subunit D
 YDR328C  SKP1 17 2 kinetochore protein complex CBF3, subunit D
 YDL132W  CDC53 13 2 controls G1/S transition
 YOL133W  HRT1 4 0 similarity to Lotus RING-finger protein (Class III)
Cluster BI0419:
Q-value = 0.67 log10(P) = -3.12 log10(E) = 4.44 log10(Pevd) = -0.32
 YLR352W  3 1 hypothetical protein (Class V)
 YLR352W  3 1 hypothetical protein (Class V)
 YDR328C  SKP1 17 2 kinetochore protein complex CBF3, subunit D
 YDL132W  CDC53 13 1 controls G1/S transition
Cluster BI0438:
Q-value = 0.33 log10(P) = -2.05 log10(E) = 6.59 log10(Pevd) = 0.00
 YNL311C  3 1 hypothetical protein (Class V)
 YNL311C  3 1 hypothetical protein (Class V)
 YDR328C  SKP1 17 1 kinetochore protein complex CBF3, subunit D
 YOR027W  STI1 1 0 stress-induced protein
Cluster BI0481:
Q-value = 0.33 log10(P) = -3.85 log10(E) = 9.98 log10(Pevd) = 0.00
 YKL103C  LAP4 10 1 aminopeptidase yscI precursor, vacuolar
 YOL082W  CVT19 18 2 similarity to YOL083W (Class IV)
 YGL156W  AMS1 2 1 alpha-mannosidase
 YFL034W  0 0 similarity to hypothetical S. pombe protein and to C.elegans F35D11 protein (Class IV)
Cluster BI0483:
Q-value = 0.83 log10(P) = -8.34 log10(E) = 2.84 log10(Pevd) = -2.91
 YDL003W  MCD1 2 2 Mitotic Chromosome Determinant
 YFL008W  SMC1 6 3 chromosome segregation protein
 YJL074C  SMC3 3 3 required for structural maintenance of chromosomes
 YIL026C  IRR1 3 2 essential protein
Cluster BI0493:
Q-value = 0.33 log10(P) = -4.34 log10(E) = 6.83 log10(Pevd) = 0.00
 YLR006C  SSK1 4 2 two-component signal transducer
 YLR233C  EST1 7 0 telomere elongation protein
 YNR031C  SSK2 1 1 MAP kinase kinase kinase of the high osmolarity signal transduction pathway
 YCR073C  SSK22 2 1 MAP kinase kinase kinase
Cluster BI0514:
Q-value = 0.50 log10(P) = -6.22 log10(E) = 5.86 log10(Pevd) = -0.11
 YPL203W  TPK2 3 1 cAMP-dependent protein kinase 2, catalytic chain
 YIL033C  BCY1 6 3 cAMP dependent protein kinase, regulatory subunit
 YKL166C  TPK3 1 1 cAMP-dependent protein kinase 3, catalytic chain
 YJL164C  TPK1 1 1 cAMP-dependent protein kinase 1, catalytic chain
Cluster BI0524:
Q-value = 0.42 log10(P) = -25.51 log10(E) = -4.65 log10(Pevd) = -3.20
 YGR252W  GCN5 16 5 histone acetyltransferase
 YMR319C  FET4 1 0 low affinity Fe(II) iron transport protein
 YCL010C  2 0 strong similarity to Saccharomyces pastorianus hypothetical protein LgYCL010C (Class IV)
 YBR081C  SPT7 13 5 involved in alteration of transcription start site selection
 YPL254W  HFI1 13 5 transcriptional coactivator
 YGL112C  TAF60 19 5 TFIID and SAGA subunit
 YDR448W  ADA2 21 5 general transcriptional adaptor or co-activator
 YHR099W  TRA1 15 5 component of the Ada-Spt transcriptional regulatory complex
 YMR223W  UBP8 1 0 similarity to mouse deubiquitinating enzyme and UBP13P,UBP9,DOA4P (Class III)
Cluster BI0546:
Q-value = 0.24 log10(P) = -11.23 log10(E) = 11.70 log10(Pevd) = -0.00
 YNL113W  RPC19 7 3 DNA-directed RNA polymerase I,III 16 KD subunit
 YOR341W  RPA190 0 0 DNA-directed RNA polymerase I, 190 KD alpha subunit
 YPR010C  RPA135 5 3 DNA-directed RNA polymerase I, 135 KD subunit
 YJR063W  RPA12 18 1 DNA-directed RNA polymerase I, 13.7 KD subunit
 YPR110C  RPC40 6 2 DNA-directed RNA polymerase I, III 40 KD subunit
 YFR011C  JUNK 2 1 ochre suppressor tyr-tRNA
 YOR207C  RET1 0 0 DNA-directed RNA polymerase III, 130 KD subunit
Cluster BI0581:
Q-value = 0.33 log10(P) = -22.47 log10(E) = 0.21 log10(Pevd) = -1.58
 YBL026W  LSM2 15 5 Sm-like (Lsm) protein
 YNL147W  LSM7 10 4 Sm-like (Lsm) protein
 YER112W  LSM4 14 4 Sm-like (Lsm) protein
 YDL160C  DHH1 13 2 putative RNA helicase of the DEAD box family
 YDL097C  RPN6 1 0 subunit of the regulatory particle of the proteasome
 YJR022W  LSM8 28 4 splicing factor
 YCR077C  PAT1 20 5 topoisomerase II-associated protein
 YMR268C  PRP24 1 0 pre-mRNA splicing factor
 YGL234W  ADE5,7 1 0 phosphoribosylamine-glycine ligase and phosphoribosylformylglycinamidine cyclo-ligase
Cluster BI0595:
Q-value = 0.50 log10(P) = -6.11 log10(E) = 4.25 log10(Pevd) = -0.11
 YMR001C  CDC5 3 0 involved in regulation of DNA replication
 YIL026C  IRR1 3 2 essential protein
 YFL008W  SMC1 6 2 chromosome segregation protein
 YJL074C  SMC3 3 2 required for structural maintenance of chromosomes
Cluster BI0598:
Q-value = 0.20 log10(P) = -4.63 log10(E) = 12.31 log10(Pevd) = 0.00
 YGL003C  CDH1 0 0 substrate-specific activator of APC-dependent proteolysis
 YBR160W  CDC28 14 1 cyclin-dependent protein kinase
 YIL142W  CCT2 2 0 chaperonin of the TCP1 ring complex, cytosolic
 YKR048C  NAP1 9 1 nucleosome assembly protein I
 YPR119W  CLB2 12 2 cyclin, G2/M-specific
Cluster BI0634:
Q-value = 0.30 log10(P) = -6.44 log10(E) = 7.17 log10(Pevd) = -0.00
 YBR234C  ARC40 2 0 ARP2/3 protein complex subunit, 40 kilodalton
 YDL029W  ARP2 2 1 actin-like protein
 YJR065C  ARP3 6 3 actin related protein
 YKL013C  ARC19 3 1 subunit of the ARP2/3 complex
 YNR035C  ARC35 2 1 subunit of the ARP2/3 complex
Cluster BI0645:
Q-value = 0.33 log10(P) = -4.23 log10(E) = 6.94 log10(Pevd) = 0.00
 YDR490C  PKH1 6 2 ser/thr protein kinases
 YPL004C  4 1 strong similarity to YGR086C (Class IV)
 YGR086C  3 1 strong similarity to hypothetical protein YPL004C (Class IV)
 YKL166C  TPK3 1 0 cAMP-dependent protein kinase 3, catalytic chain
Cluster BI0670:
Q-value = 0.30 log10(P) = -5.91 log10(E) = 7.71 log10(Pevd) = -0.00
 YKR026C  GCN3 15 1 translation initiation factor eIF2B, 34 KD, alpha subunit
 YDR211W  GCD6 1 1 translation initiation factor eIF2b epsilon, 81 kDa subunit
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YGR083C  GCD2 1 1 translation initiation factor eIF2B, 71 kDa (delta) subunit
 YOR260W  GCD1 3 1 translation initiation factor eIF2bgamma subunit
Cluster BI0679:
Q-value = 0.20 log10(P) = -4.05 log10(E) = 12.89 log10(Pevd) = 0.00
 YCR009C  RVS161 4 1 similarity to human amphiphysin and RVS167P (Class III)
 YGL060W  2 1 strong similarity to hypothetical protein YBR216C (Class IV)
 YDR388W  RVS167 9 2 reduced viability upon starvation protein
 YOR232W  MGE1 9 0 heat shock protein - chaperone
 YNL055C  POR1 0 0 mitochondrial outer membrane porin
Cluster BI0685:
Q-value = 0.20 log10(P) = -6.28 log10(E) = 9.69 log10(Pevd) = 0.00
 YGR083C  GCD2 1 1 translation initiation factor eIF2B, 71 kDa (delta) subunit
 YOR260W  GCD1 3 1 translation initiation factor eIF2bgamma subunit
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YCR084C  TUP1 3 0 general transcription repressor
 YDR211W  GCD6 1 1 translation initiation factor eIF2b epsilon, 81 kDa subunit
 YKR026C  GCN3 15 1 translation initiation factor eIF2B, 34 KD, alpha subunit
Cluster BI0705:
Q-value = 0.50 log10(P) = -6.22 log10(E) = 4.15 log10(Pevd) = -0.11
 YJL138C  TIF2 2 1 translation initiation factor eIF4A
 YGL049C  TIF4632 3 1 mRNA cap-binding protein (eIF4F), 130K subunit
 YGR162W  TIF4631 6 2 mRNA cap-binding protein (eIF4F), 150K subunit
 YOL139C  CDC33 5 2 translation initiation factor eIF4E
Cluster BI0720:
Q-value = 0.40 log10(P) = -8.64 log10(E) = 4.98 log10(Pevd) = -0.05
 YDL029W  ARP2 2 1 actin-like protein
 YJR065C  ARP3 6 3 actin related protein
 YKL013C  ARC19 3 2 subunit of the ARP2/3 complex
 YIL062C  ARC15 2 2 subunit of the ARP2/3 complex
 YBR234C  ARC40 2 0 ARP2/3 protein complex subunit, 40 kilodalton
Cluster BI0729:
Q-value = 1.00 log10(P) = -9.74 log10(E) = -0.98 log10(Pevd) = -4.46
 YHR107C  CDC12 9 3 septin
 YCR002C  CDC10 6 3 cell division control protein
 YLR314C  CDC3 5 3 cell division control protein
 YJR076C  CDC11 6 3 septin
Cluster CZ0003:
Q-value = 0.67 log10(P) = -16.22 log10(E) = -6.53 log10(Pevd) = -3.99
 YLR127C  APC2 12 4 component of the anaphase promoting complex
 YGL240W  DOC1 10 4 component of the anaphase promoting complex
 YFL039C  ACT1 22 0 actin
 YNL172W  APC1 10 4 subunit of anaphase-promoting complex (cyclosome)
 YKL022C  CDC16 10 4 subunit of anaphase-promoting complex (cyclosome)
 YBL084C  CDC27 10 4 subunit of anaphase-promoting complex (cyclosome)
Cluster CZ0004:
Q-value = 1.00 log10(P) = -14.55 log10(E) = -3.39 log10(Pevd) = -6.42
 YLR314C  CDC3 5 4 cell division control protein
 YCR002C  CDC10 6 4 cell division control protein
 YJR076C  CDC11 6 4 septin
 YHR107C  CDC12 9 4 septin
 YDL225W  SHS1 5 4 septin
Cluster CZ0005:
Q-value = 0.33 log10(P) = -4.16 log10(E) = 7.02 log10(Pevd) = 0.00
 YBR200W  BEM1 10 2 bud emergence mediator
 YAL041W  CDC24 11 1 GTP/GDP exchange factor for CDC42P
 YER114C  BOI2 2 1 budding protein
 YLR357W  RSC2 1 0 member of RSC complex, which remodels the structure of chromatin
Cluster CZ0007:
Q-value = 0.29 log10(P) = -17.40 log10(E) = 0.23 log10(Pevd) = -0.24
 YDR356W  NUF1 4 1 spindle pole body component
 YGR078C  PAC10 5 3 GIM4 - Gim complex component
 YLR212C  TUB4 7 4 gamma tubulin
 YDL126C  CDC48 3 0 microsomal protein of CDC48/PAS1/SEC18 family of ATPases
 YNL153C  GIM3 6 3 Gim complex component
 YGR240C  PFK1 3 0 6-phosphofructokinase, alpha subunit
 YNL126W  SPC98 5 2 spindle pole body component
 YLR200W  YKE2 10 3 Gim complex component
Cluster CZ0071:
Q-value = 0.38 log10(P) = -15.44 log10(E) = 0.32 log10(Pevd) = -0.98
 YDR189W  SLY1 2 0 hydrophilic suppressor of YPT1 and member of the SEC1P family
 YGL095C  VPS45 3 1 vacuolar protein sorting-associated protein
 YBL050W  SEC17 11 3 transport vesicle fusion protein
 YDR468C  TLG1 7 3 member of the syntaxin family of t-SNAREs
 YOL018C  TLG2 10 4 member of the syntaxin family of t-SNAREs
 YMR197C  VTI1 8 4 v-SNARE: involved in Golgi retrograde protein traffic
 YKL196C  YKT6 4 1 SNARE protein for Endoplasmic Reticulum-Golgi transport
Cluster CZ0075:
Q-value = 0.56 log10(P) = -80.24 log10(E) = -40.59 log10(Pevd) = -10.75
 YKR068C  BET3 9 9 involved in targeting and fusion of ER to golgi transport vesicles
 YBR254C  TRS20 11 9 TRAPP subunit of 20 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YML077W  BET5 10 9 involved in targeting and fusion of ER to golgi transport vesicles
 YLR342W  FKS1 1 0 1,3-beta-D-glucan synthase, catalytic subunit
 YDR108W  GSG1 10 8 sporulation specific protein
 YGR166W  KRE11 10 8 beta-glucan synthesis-associated protein
 YPL235W  RVB2 1 0 RUVB-like protein
 YGR143W  SKN1 0 0 glucan synthase subunit
 YDR407C  TRS120 9 9 TRAPP subunit of 120 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YMR218C  TRS130 9 9 TRAPP subunit of 130 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YDR246W  TRS23 9 9 TRAPP subunit of 20 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YDR472W  TRS31 9 9 TRAPP subunit of 31 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YOR115C  TRS33 10 9 TRAPP subunit of 33 kDa involved in targeting and fusion of ER to golgi transport vesicles
Cluster CZ0084:
Q-value = 0.24 log10(P) = -11.26 log10(E) = 11.67 log10(Pevd) = -0.00
 YKL135C  APL2 7 3 AP-1 complex subunit, beta1-adaptin, 82 KD
 YPR029C  APL4 5 3 AP-1 complex subunit, gamma-adaptin, 94 KD
 YPL259C  APM1 2 1 AP-1 complex subunit, mu1 subunit, 54 KD
 YHL019C  APM2 4 2 involved in clathrin-independent transport processes
 YLR170C  APS1 1 1 AP-1 complex subunit, sigma1 subunit, 18 KD
 YBR084W  MIS1 0 0 C1-tetrahydrofolate synthase precursor, mitochondrial
 YPR010C  RPA135 5 0 DNA-directed RNA polymerase I, 135 KD subunit
Cluster CZ0087:
Q-value = 0.27 log10(P) = -7.77 log10(E) = 8.21 log10(Pevd) = -0.00
 YDL216C  RRI1 2 1 similarity to Jun activation domain binding protein homologue of A. thaliana (Class III)
 YDL147W  RPN5 6 1 subunit of the regulatory particle of the proteasome
 YDR179C  4 2 weak similarity to hypothetical protein D. melanogaster (Class IV)
 YIL071C  PCI8 2 1 hypothetical protein (Class V)
 YMR025W  6 2 hypothetical protein (Class V)
 YOL117W  1 1 weak similarity to human sodium channel alpha chain HBA (Class III)
Cluster CZ0150:
Q-value = 0.50 log10(P) = -5.30 log10(E) = 8.54 log10(Pevd) = -0.11
 YNL118C  DCP2 5 2 suppressor protein of a yeast pet mutant
 YOL149W  DCP1 21 2 mRNA decapping enzyme
 YML091C  RPM2 0 0 ribonuclease P precursor, mitochondrial
 YEL015W  12 2 weak similarity to SPA2P (Class III)
Cluster CZ0167:
Q-value = 0.33 log10(P) = -4.16 log10(E) = 9.68 log10(Pevd) = 0.00
 YJL005W  CYR1 1 1 adenylate cyclase
 YNL138W  SRV2 3 2 adenylate cyclase-associated protein, 70kDa
 YFL039C  ACT1 22 1 actin
 YGR233C  PHO81 0 0 cyclin-dependent kinase inhibitor
Cluster CZ0181:
Q-value = 0.30 log10(P) = -6.95 log10(E) = 6.67 log10(Pevd) = -0.00
 YGR116W  SPT6 4 0 transcription elongation protein
 YIL035C  CKA1 4 2 casein kinase II, catalytic alpha chain
 YOR061W  CKA2 4 2 casein kinase II alpha' chain
 YGL019W  CKB1 6 2 casein kinase II, beta subunit
 YPR133C  IWS1 1 0 similarity to C.elegans hypothetical protein (Class IV)
Cluster CZ0215:
Q-value = 0.50 log10(P) = -6.22 log10(E) = 5.86 log10(Pevd) = -0.11
 YKL139W  CTK1 2 2 carboxy-terminal domain (CTD) kinase, alpha subunit
 YJL006C  CTK2 2 2 carboxy-terminal domain (CTD) kinase, beta subunit
 YML112W  CTK3 3 2 carboxy-terminal domain (CTD) kinase, gamma subunit
 YBR169C  SSE2 1 0 heat shock protein of the HSP70 family
Cluster MI0006:
Q-value = 1.00 log10(P) = -10.21 log10(E) = 0.15 log10(Pevd) = -4.46
 YBR126C  TPS1 3 3 alpha,alpha-trehalose-phosphate synthase, 56 KD subunit
 YDR074W  TPS2 6 3 alpha,alpha-trehalose-phosphate synthase, 102 KD subunit
 YML100W  TSL1 3 3 alpha,alpha-trehalose-phosphate synthase, 123 KD subunit
 YMR261C  TPS3 3 3 alpha,alpha-trehalose-phosphate synthase, 115 KD subunit
Cluster MI0008:
Q-value = 1.00 log10(P) = -82.33 log10(E) = -66.33 log10(Pevd) = -99.00
 YBL084C  CDC27 10 10 subunit of anaphase-promoting complex (cyclosome)
 YDL008W  APC11 10 10 subunit of the anaphase promoting complex
 YDR118W  APC4 10 10 subunit of the anaphase promoting complex
 YFR036W  CDC26 12 10 subunit of anaphase-promoting complex (cyclosome)
 YGL240W  DOC1 10 10 component of the anaphase promoting complex
 YHR166C  CDC23 15 10 subunit of anaphase-promoting complex (cyclosome)
 YKL022C  CDC16 10 10 subunit of anaphase-promoting complex (cyclosome)
 YLR102C  APC9 13 10 subunit of the Anaphase Promoting Complex
 YLR127C  APC2 12 10 component of the anaphase promoting complex
 YNL172W  APC1 10 10 subunit of anaphase-promoting complex (cyclosome)
 YOR249C  APC5 10 10 component of the anaphase-promoting complex
Cluster MI0014:
Q-value = 0.50 log10(P) = -6.22 log10(E) = 5.86 log10(Pevd) = -0.11
 YIL033C  BCY1 6 3 cAMP dependent protein kinase, regulatory subunit
 YJL164C  TPK1 1 1 cAMP-dependent protein kinase 1, catalytic chain
 YKL166C  TPK3 1 1 cAMP-dependent protein kinase 3, catalytic chain
 YPL203W  TPK2 3 1 cAMP-dependent protein kinase 2, catalytic chain
Cluster MI0015:
Q-value = 0.21 log10(P) = -13.54 log10(E) = 5.34 log10(Pevd) = -0.00
 YER123W  YCK3 1 0 casein kinase, isoform 3
 YGL019W  CKB1 6 3 casein kinase II, beta subunit
 YHR135C  YCK1 4 0 casein kinase I isoform
 YIL035C  CKA1 4 3 casein kinase II, catalytic alpha chain
 YNL154C  YCK2 8 0 casein kinase I isoform
 YOR039W  CKB2 9 3 casein kinase II beta' chain
 YOR061W  CKA2 4 3 casein kinase II alpha' chain
 YPL204W  HRR25 4 0 casein kinase I, ser/thr/tyr protein kinase
Cluster MI0029:
Q-value = 1.00 log10(P) = -16.57 log10(E) = -5.40 log10(Pevd) = -6.42
 YEL003W  GIM4 5 4 Gim complex component
 YGR078C  PAC10 5 4 GIM4 - Gim complex component
 YLR200W  YKE2 10 4 Gim complex component
 YML094W  GIM5 5 4 Gim complex component
 YNL153C  GIM3 6 4 Gim complex component
Cluster MI0030:
Q-value = 0.20 log10(P) = -5.57 log10(E) = 11.76 log10(Pevd) = 0.00
 YDL090C  RAM1 1 1 protein farnesyltransferase, beta subunit
 YGL155W  CDC43 1 1 geranylgeranyltransferase beta subunit
 YJL031C  BET4 2 1 geranylgeranyl transferase, alpha chain
 YKL019W  RAM2 3 2 protein farnesyltransferase, alpha subunit
 YOR370C  MRS6 1 0 geranylgeranyltransferase regulatory subunit
 YPR176C  BET2 1 1 geranylgeranyltransferase type II beta subunit
Cluster MI0036:
Q-value = 0.68 log10(P) = -140.97 log10(E) = -110.58 log10(Pevd) = -99.00
 YBR081C  SPT7 13 13 involved in alteration of transcription start site selection
 YBR198C  TAF90 16 13 TFIID and SAGA subunit
 YDR145W  TAF61 14 13 TFIID and SAGA subunit
 YDR167W  TAF25 22 13 TFIID and SAGA subunit
 YDR176W  NGG1 23 13 general transcriptional adaptor or co-activator
 YDR392W  SPT3 14 13 general transcriptional adaptor or co-activator
 YDR448W  ADA2 21 13 general transcriptional adaptor or co-activator
 YEL056W  HAT2 1 1 subunit of the major yeast histone acetyltransferase
 YGL112C  TAF60 19 13 TFIID and SAGA subunit
 YGR252W  GCN5 16 13 histone acetyltransferase
 YHR099W  TRA1 15 13 component of the Ada-Spt transcriptional regulatory complex
 YLR055C  SPT8 13 13 transcriptional adaptor or co-activator
 YMR236W  TAF17 20 13 TFIID and SAGA subunit
 YOL148C  SPT20 15 13 member of the TBP class of SPT proteins that alter transcription site selection
 YOR244W  ESA1 2 0 histone acetyltransferase
 YPL254W  HFI1 13 13 transcriptional coactivator
 YPL001W  HAT1 1 1 histone acetyltransferase subunit
Cluster MI0037:
Q-value = 0.33 log10(P) = -4.16 log10(E) = 5.58 log10(Pevd) = 0.00
 YMR263W  SAP30 5 1 subunit of the histone deacetylase B complex
 YNL330C  RPD3 4 2 histone deacetylase B
 YNL021W  HDA1 3 0 histone deacetylase A
 YOL004W  SIN3 8 1 transcription regulatory protein
Cluster MI0063:
Q-value = 0.73 log10(P) = -18.49 log10(E) = -6.72 log10(Pevd) = -4.88
 YDL132W  CDC53 13 5 controls G1/S transition
 YDR054C  CDC34 7 4 E2 ubiquitin-conjugating enzyme
 YDR328C  SKP1 17 5 kinetochore protein complex CBF3, subunit D
 YFL009W  CDC4 4 3 cell division control protein
 YIL046W  MET30 12 3 involved in regulation of sulfur assimilation genes and cell cycle progression
 YJR090C  GRR1 5 2 required for glucose repression and for glucose and cation transport
Cluster MI0065:
Q-value = 0.24 log10(P) = -46.68 log10(E) = -18.74 log10(Pevd) = -2.28
 YBL016W  FUS3 11 3 mitogen-activated protein kinase (MAP kinase)
 YDL159W  STE7 6 3 ser/thr/tyr protein kinase of MAP kinase kinase family
 YDR103W  STE5 12 5 pheromone signal transduction pathway protein
 YDR422C  SIP1 7 2 multicopy suppressor of SNF1
 YDR477W  SNF1 10 5 carbon catabolite derepressing ser/thr protein kinase
 YER027C  GAL83 3 2 glucose repression protein
 YGL208W  SIP2 2 2 dominant suppressor of some ts mutations in RPO21 and PRP4
 YGL115W  SNF4 10 4 nuclear regulatory protein
 YGR040W  KSS1 7 3 ser/thr protein kinase of the MAP kinase family
 YHR005C  GPA1 3 2 GTP-binding protein alpha subunit of the pheromone pathway
 YJL089W  SIP4 1 1 interacts with SNF1 protein kinase
 YJR086W  STE18 5 2 GTP-binding protein gamma subunit of the pheromone pathway
 YLR362W  STE11 16 6 ser/thr protein kinase of the MEKK family
 YOR212W  STE4 12 4 GTP-binding protein beta subunit of the pheromone pathway
Cluster MI0090:
Q-value = 1.00 log10(P) = -9.76 log10(E) = -0.54 log10(Pevd) = -4.46
 YGL019W  CKB1 6 3 casein kinase II, beta subunit
 YIL035C  CKA1 4 3 casein kinase II, catalytic alpha chain
 YOR039W  CKB2 9 3 casein kinase II beta' chain
 YOR061W  CKA2 4 3 casein kinase II alpha' chain
Cluster MI0096:
Q-value = 0.20 log10(P) = -21.00 log10(E) = 1.79 log10(Pevd) = -0.01
 YAL040C  CLN3 7 1 cyclin, G1/S-specific
 YBR160W  CDC28 14 9 cyclin-dependent protein kinase
 YDL155W  CLB3 5 1 cyclin, G2/M-specific
 YGR108W  CLB1 3 1 cyclin, G2/M-specific
 YGR109C  CLB6 1 1 cyclin, B-type
 YLR210W  CLB4 4 1 cyclin, G2/M-specific
 YMR199W  CLN1 5 1 cyclin, G1/S-specific
 YPL256C  CLN2 3 1 cyclin, G1/S-specific
 YPR119W  CLB2 12 1 cyclin, G2/M-specific
 YPR120C  CLB5 3 1 cyclin, B-type
Cluster MI0097:
Q-value = 0.33 log10(P) = -10.94 log10(E) = 6.39 log10(Pevd) = -0.03
 YDL127W  PCL2 5 1 cyclin, G1/S-specific
 YGL134W  PCL10 2 1 cyclin like protein interacting with PHO85P
 YNL289W  PCL1 1 1 cyclin, G1/S-specific
 YOL001W  PHO80 1 1 cyclin
 YPL219W  PCL8 2 1 cyclin like protein interacting with PHO85P
 YPL031C  PHO85 14 5 cyclin-dependent protein kinase
Cluster MI0101:
Q-value = 0.43 log10(P) = -22.56 log10(E) = -2.06 log10(Pevd) = -2.56
 YCR002C  CDC10 6 4 cell division control protein
 YDL225W  SHS1 5 4 septin
 YDR218C  SPR28 2 2 septin-related sporulation protein
 YGR059W  SPR3 1 1 sporulation-specific septin
 YHR107C  CDC12 9 4 septin
 YJR076C  CDC11 6 5 septin
 YLR314C  CDC3 5 4 cell division control protein
 YML104C  MDM1 2 0 intermediate filament protein
Cluster MI0122:
Q-value = 0.87 log10(P) = -128.45 log10(E) = -108.47 log10(Pevd) = -99.00
 YBR081C  SPT7 13 13 involved in alteration of transcription start site selection
 YBR198C  TAF90 16 13 TFIID and SAGA subunit
 YDR145W  TAF61 14 13 TFIID and SAGA subunit
 YDR167W  TAF25 22 13 TFIID and SAGA subunit
 YDR176W  NGG1 23 13 general transcriptional adaptor or co-activator
 YDR392W  SPT3 14 13 general transcriptional adaptor or co-activator
 YDR448W  ADA2 21 13 general transcriptional adaptor or co-activator
 YGL112C  TAF60 19 13 TFIID and SAGA subunit
 YGR252W  GCN5 16 13 histone acetyltransferase
 YHR099W  TRA1 15 13 component of the Ada-Spt transcriptional regulatory complex
 YLR055C  SPT8 13 13 transcriptional adaptor or co-activator
 YMR236W  TAF17 20 13 TFIID and SAGA subunit
 YOL148C  SPT20 15 13 member of the TBP class of SPT proteins that alter transcription site selection
 YOR244W  ESA1 2 0 histone acetyltransferase
 YPL254W  HFI1 13 13 transcriptional coactivator
Cluster MI0134:
Q-value = 0.98 log10(P) = -69.19 log10(E) = -53.07 log10(Pevd) = -15.95
 YBR254C  TRS20 11 9 TRAPP subunit of 20 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YDR108W  GSG1 10 8 sporulation specific protein
 YDR246W  TRS23 9 9 TRAPP subunit of 20 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YDR407C  TRS120 9 9 TRAPP subunit of 120 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YDR472W  TRS31 9 9 TRAPP subunit of 31 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YGR166W  KRE11 10 8 beta-glucan synthesis-associated protein
 YKR068C  BET3 9 9 involved in targeting and fusion of ER to golgi transport vesicles
 YML077W  BET5 10 9 involved in targeting and fusion of ER to golgi transport vesicles
 YMR218C  TRS130 9 9 TRAPP subunit of 130 kDa involved in targeting and fusion of ER to golgi transport vesicles
 YOR115C  TRS33 10 9 TRAPP subunit of 33 kDa involved in targeting and fusion of ER to golgi transport vesicles
Cluster MI0136:
Q-value = 1.00 log10(P) = -10.25 log10(E) = 0.12 log10(Pevd) = -4.46
 YLR148W  PEP3 3 3 vacuolar membrane protein
 YLR396C  VPS33 4 3 vacuolar sorting protein
 YMR231W  PEP5 4 3 vacuolar biogenesis protein
 YPL045W  VPS16 3 3 vacuolar sorting protein
Cluster MI0137:
Q-value = 0.40 log10(P) = -12.82 log10(E) = 3.15 log10(Pevd) = -0.52
 YDL029W  ARP2 2 1 actin-like protein
 YIL062C  ARC15 2 2 subunit of the ARP2/3 complex
 YJR065C  ARP3 6 5 actin related protein
 YKL013C  ARC19 3 2 subunit of the ARP2/3 complex
 YLR370C  ARC18 2 1 subunit of the ARP2/3 complex
 YNR035C  ARC35 2 1 subunit of the ARP2/3 complex
Cluster MI0145:
Q-value = 0.33 log10(P) = -25.78 log10(E) = -3.09 log10(Pevd) = -1.58
 YGR082W  TOM20 7 4 mitochondrial outer membrane import receptor subunit, 20 kD
 YHR117W  TOM71 1 0 protein with similarity to TOM70P/Mas70p
 YMR060C  TOM37 1 1 mitochondrial outer membrane import receptor subunit, 37 kD
 YMR203W  TOM40 8 6 forms the hydrophilic channel of the mitochondrial import pore for preproteins
 YNL131W  TOM22 4 3 mitochondrial outer membrane import receptor complex subunit
 YNL121C  TOM70 5 4 mitochondrial outer membrane specialized import receptor
 YNL070W  TOM7 7 4 mitochondrial outer membrane import receptor subunit, 7 kD
 YOR045W  TOM6 3 1 mitochondrial outer membrane import receptor subunit, 6 kD
 YPR133W-A  TOM5 1 1 mitochondrial outer membrane protein
Cluster MI0150:
Q-value = 1.00 log10(P) = -9.22 log10(E) = -1.50 log10(Pevd) = -4.46
 YFR002W  NIC96 7 3 nuclear pore protein
 YGL172W  NUP49 9 3 nuclear pore protein
 YGR119C  NUP57 22 3 nuclear pore protein
 YJL041W  NSP1 7 3 nuclear pore protein
Cluster MI0153:
Q-value = 0.20 log10(P) = -6.76 log10(E) = 13.21 log10(Pevd) = 0.00
 YDL116W  NUP84 19 1 nuclear pore protein
 YGL100W  SEH1 1 0 nuclear pore protein
 YGL092W  NUP145 10 3 nuclear pore protein
 YJR042W  NUP85 0 0 nuclear pore protein
 YKL057C  NUP120 6 1 nuclear pore protein
 YLR208W  SEC13 5 1 protein transport protein
Cluster MI0178:
Q-value = 0.38 log10(P) = -31.92 log10(E) = -10.69 log10(Pevd) = -3.22
 YAL043C  PTA1 8 4 pre-tRNA processing protein / PF I subunit
 YDR228C  PCF11 9 3 component of pre-mRNA 3'-end processing factor CF I
 YDR301W  CFT1 7 4 pre-mRNA 3'-end processing factor CF II
 YGL044C  RNA15 20 3 component of pre-mRNA 3'-end processing factor CF I
 YJR093C  FIP1 10 5 component of pre-mRNA polyadenylation factor PF I
 YLR115W  CFT2 6 4 cleavage and polyadenylation specificity factor, part of CF II
 YLR277C  YSH1 10 4 component of pre-mRNA polyadenylation factor PF I
 YMR061W  RNA14 8 4 component of pre-mRNA 3'-end processing factor CF I
 YOL123W  HRP1 5 2 CF Ib (RNA3' Cleavage factor Ib)
 YOR250C  CLP1 1 1 cleavage/polyadenylation factor IA subunit
Cluster MI0186:
Q-value = 1.00 log10(P) = -8.48 log10(E) = -0.11 log10(Pevd) = -4.46
 YDL132W  CDC53 13 3 controls G1/S transition
 YDR054C  CDC34 7 3 E2 ubiquitin-conjugating enzyme
 YDR328C  SKP1 17 3 kinetochore protein complex CBF3, subunit D
 YFL009W  CDC4 4 3 cell division control protein
Cluster MI0187:
Q-value = 0.83 log10(P) = -7.82 log10(E) = 0.17 log10(Pevd) = -2.91
 YDL132W  CDC53 13 3 controls G1/S transition
 YDR054C  CDC34 7 2 E2 ubiquitin-conjugating enzyme
 YDR328C  SKP1 17 3 kinetochore protein complex CBF3, subunit D
 YJR090C  GRR1 5 2 required for glucose repression and for glucose and cation transport
Cluster MI0188:
Q-value = 1.00 log10(P) = -8.95 log10(E) = -1.95 log10(Pevd) = -4.46
 YDL132W  CDC53 13 3 controls G1/S transition
 YDR054C  CDC34 7 3 E2 ubiquitin-conjugating enzyme
 YDR328C  SKP1 17 3 kinetochore protein complex CBF3, subunit D
 YIL046W  MET30 12 3 involved in regulation of sulfur assimilation genes and cell cycle progression
Cluster MI0190:
Q-value = 0.53 log10(P) = -16.00 log10(E) = -0.02 log10(Pevd) = -2.22
 YDR422C  SIP1 7 2 multicopy suppressor of SNF1
 YDR477W  SNF1 10 5 carbon catabolite derepressing ser/thr protein kinase
 YER027C  GAL83 3 2 glucose repression protein
 YGL208W  SIP2 2 2 dominant suppressor of some ts mutations in RPO21 and PRP4
 YGL115W  SNF4 10 4 nuclear regulatory protein
 YJL089W  SIP4 1 1 interacts with SNF1 protein kinase
Cluster MI0191:
Q-value = 0.80 log10(P) = -12.80 log10(E) = -3.51 log10(Pevd) = -4.16
 YBL016W  FUS3 11 3 mitogen-activated protein kinase (MAP kinase)
 YDL159W  STE7 6 3 ser/thr/tyr protein kinase of MAP kinase kinase family
 YDR103W  STE5 12 4 pheromone signal transduction pathway protein
 YGR040W  KSS1 7 3 ser/thr protein kinase of the MAP kinase family
 YLR362W  STE11 16 3 ser/thr protein kinase of the MEKK family
Cluster MI0211:
Q-value = 0.20 log10(P) = -5.03 log10(E) = 9.72 log10(Pevd) = 0.00
 YAL001C  TFC3 1 1 TFIIIC (transcription initiation factor) subunit, 138 kD
 YBR123C  TFC1 1 1 TFIIIC (transcription initiation factor) subunit, 95 kD
 YDR362C  TFC6 2 1 TFIIIC (transcription initiation factor) subunit, 91 kD
 YGR047C  TFC4 4 0 TFIIIC (transcription initiation factor) subunit, 131 kD
 YOR110W  TFC7 5 1 TFIIIC (transcription initiation factor) subunit, 55 kDa
Cluster MI0212:
Q-value = 1.00 log10(P) = -9.74 log10(E) = 0.01 log10(Pevd) = -4.46
 YBL021C  HAP3 4 3 CCAAT-binding factor subunit
 YGL237C  HAP2 8 3 CCAAT-binding factor subunit
 YKL109W  HAP4 3 3 CCAAT-binding factor subunit
 YOR358W  HAP5 7 3 CCAAT-binding factor subunit
Cluster MI0216:
Q-value = 0.50 log10(P) = -5.77 log10(E) = 4.60 log10(Pevd) = -0.11
 YBL014C  RRN6 4 2 RNA polymerase I specific transcription initiation factor
 YER148W  SPT15 10 0 the TATA-binding protein TBP
 YJL025W  RRN7 2 2 polymerase I specific transcription initiation factor
 YML043C  RRN11 3 2 RNA polymerase I specific transcription initiation factor
Cluster MI0221:
Q-value = 0.23 log10(P) = -34.92 log10(E) = 4.73 log10(Pevd) = -1.48
 YBR198C  TAF90 16 4 TFIID and SAGA subunit
 YCR042C  TSM1 1 1 component of TFIID complex
 YDR145W  TAF61 14 4 TFIID and SAGA subunit
 YDR167W  TAF25 22 10 TFIID and SAGA subunit
 YER148W  SPT15 10 2 the TATA-binding protein TBP
 YGL112C  TAF60 19 4 TFIID and SAGA subunit
 YGR274C  TAF145 2 2 TFIID subunit (TBP-associated factor), 145 kD
 YML098W  TAF19 4 2 TFIID subunit (TBP-associated factor), 19 kD
 YML015C  TAF40 5 2 TFIID subunit (TBP-associated factor), 40KD
 YMR227C  TAF67 0 0 TFIID subunit (TBP-associated factor), 67 kD
 YMR236W  TAF17 20 4 TFIID and SAGA subunit
 YPL129W  ANC1 2 1 TFIIF subunit (transcription initiation factor), 30 kD
 YPL011C  TAF47 2 0 component of the TBP-associated protein complex
Cluster MI0258:
Q-value = 0.57 log10(P) = -20.97 log10(E) = -2.70 log10(Pevd) = -3.88
 YCR002C  CDC10 6 4 cell division control protein
 YDL225W  SHS1 5 4 septin
 YDR218C  SPR28 2 2 septin-related sporulation protein
 YGR059W  SPR3 1 1 sporulation-specific septin
 YHR107C  CDC12 9 4 septin
 YJR076C  CDC11 6 5 septin
 YLR314C  CDC3 5 4 cell division control protein
Cluster MI0283:
Q-value = 1.00 log10(P) = -12.42 log10(E) = -5.57 log10(Pevd) = -6.42
 YDR176W  NGG1 23 4 general transcriptional adaptor or co-activator
 YDR448W  ADA2 21 4 general transcriptional adaptor or co-activator
 YGR252W  GCN5 16 4 histone acetyltransferase
 YOL148C  SPT20 15 4 member of the TBP class of SPT proteins that alter transcription site selection
 YPL254W  HFI1 13 4 transcriptional coactivator
Cluster MI0284:
Q-value = 1.00 log10(P) = -104.95 log10(E) = -91.93 log10(Pevd) = -99.00
 YBR081C  SPT7 13 12 involved in alteration of transcription start site selection
 YBR198C  TAF90 16 12 TFIID and SAGA subunit
 YDR145W  TAF61 14 12 TFIID and SAGA subunit
 YDR167W  TAF25 22 12 TFIID and SAGA subunit
 YDR176W  NGG1 23 12 general transcriptional adaptor or co-activator
 YDR392W  SPT3 14 12 general transcriptional adaptor or co-activator
 YDR448W  ADA2 21 12 general transcriptional adaptor or co-activator
 YGL112C  TAF60 19 12 TFIID and SAGA subunit
 YGR252W  GCN5 16 12 histone acetyltransferase
 YHR099W  TRA1 15 12 component of the Ada-Spt transcriptional regulatory complex
 YLR055C  SPT8 13 12 transcriptional adaptor or co-activator
 YMR236W  TAF17 20 12 TFIID and SAGA subunit
 YOL148C  SPT20 15 12 member of the TBP class of SPT proteins that alter transcription site selection
Cluster MI0293:
Q-value = 0.50 log10(P) = -6.22 log10(E) = 4.96 log10(Pevd) = -0.11
 YKL135C  APL2 7 2 AP-1 complex subunit, beta1-adaptin, 82 KD
 YLR170C  APS1 1 1 AP-1 complex subunit, sigma1 subunit, 18 KD
 YPL259C  APM1 2 1 AP-1 complex subunit, mu1 subunit, 54 KD
 YPR029C  APL4 5 2 AP-1 complex subunit, gamma-adaptin, 94 KD
Cluster MI0295:
Q-value = 0.33 log10(P) = -4.17 log10(E) = 7.91 log10(Pevd) = 0.00
 YBR288C  APM3 2 1 AP-3 complex subunit, mu3 subunit, 55 KD
 YGR261C  APL6 1 1 AP-3 complex subunit, beta3-adaptin, 91 KD
 YJL024C  APS3 1 1 AP-3 complex subunit, sigma3 subunit, 22 KD
 YPL195W  APL5 1 1 AP-3 complex subunit, gamma-adaptin, 107 KD
Cluster MI0299:
Q-value = 0.50 log10(P) = -10.02 log10(E) = 3.60 log10(Pevd) = -0.81
 YHR012W  VPS29 2 1 involved in vacuolar protein sorting
 YJL154C  VPS35 5 4 protein-sorting protein, vacuolar
 YJL053W  PEP8 4 1 vacuolar protein sorting/targeting protein
 YOR069W  VPS5 3 2 involved in Golgi retention and vacuolar sorting
 YOR132W  VPS17 2 2 vacuolar protein sorting-associated protein
Cluster MI0318:
Q-value = 0.30 log10(P) = -6.94 log10(E) = 6.68 log10(Pevd) = -0.00
 YBR091C  MRS5 2 0 subunit of the TIM22-complex
 YDL217C  TIM22 5 2 subunit of the TIM22-complex
 YEL020W-A  TIM9 1 1 essential subunit of the TIM22-complex for mitochondrial protein import
 YHR005C-A  MRS11 3 2 subunit of the TIM22-complex
 YJL054W  TIM54 4 1 translocase for the insertion of proteins into the mitochondrial inner membrane
Cluster MI0355:
Q-value = 0.20 log10(P) = -5.00 log10(E) = 11.94 log10(Pevd) = 0.00
 YBR087W  RFC5 3 1 DNA replication factor C, 40 KD subunit
 YJR068W  RFC2 2 1 DNA replication factor C, 41 KD subunit
 YNL290W  RFC3 1 1 DNA replication factor C, 40 kDa subunit
 YOL094C  RFC4 1 1 DNA replication factor C, 37 kDa subunit
 YOR217W  RFC1 0 0 DNA replication factor C, 95 KD subunit
Cluster MI0369:
Q-value = 0.60 log10(P) = -10.37 log10(E) = 2.23 log10(Pevd) = -1.91
 YDR228C  PCF11 9 3 component of pre-mRNA 3'-end processing factor CF I
 YGL044C  RNA15 20 3 component of pre-mRNA 3'-end processing factor CF I
 YMR061W  RNA14 8 3 component of pre-mRNA 3'-end processing factor CF I
 YOL123W  HRP1 5 2 CF Ib (RNA3' Cleavage factor Ib)
 YOR250C  CLP1 1 1 cleavage/polyadenylation factor IA subunit
Cluster MI0372:
Q-value = 0.52 log10(P) = -21.94 log10(E) = 0.99 log10(Pevd) = -3.15
 YCR035C  RRP43 6 4 rRNA processing protein
 YDL111C  RRP42 5 4 rRNA processing protein
 YDR280W  RRP45 1 1 rRNA processing protein
 YGR095C  RRP46 0 0 involved in rRNA processing
 YGR195W  SKI6 6 5 3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA
 YHR069C  RRP4 4 4 3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA
 YOL021C  DIS3 5 4 3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA
Cluster MI0403:
Q-value = 0.30 log10(P) = -5.91 log10(E) = 7.71 log10(Pevd) = -0.00
 YDR211W  GCD6 1 1 translation initiation factor eIF2b epsilon, 81 kDa subunit
 YGR083C  GCD2 1 1 translation initiation factor eIF2B, 71 kDa (delta) subunit
 YKR026C  GCN3 15 1 translation initiation factor eIF2B, 34 KD, alpha subunit
 YLR291C  GCD7 23 2 translation initiation factor eIF2b, 43 kDa subunit
 YOR260W  GCD1 3 1 translation initiation factor eIF2bgamma subunit
Cluster MI0404:
Q-value = 0.48 log10(P) = -18.69 log10(E) = -1.84 log10(Pevd) = -2.42
 YBR079C  RPG1 2 2 translation initiation factor eIF3 (p110 subunit)
 YDR429C  TIF35 6 2 translation initiation factor eIF3 (p33 subunit)
 YMR146C  TIF34 4 3 translation initiation factor eIF3, p39 subunit
 YMR309C  NIP1 7 4 associated with 40s ribosomal subunit
 YNL244C  SUI1 3 2 translation initiation factor 3 (eIF3)
 YNL062C  GCD10 3 1 translation initiation factor eIF3 RNA-binding subunit
 YOR361C  PRT1 7 6 translation initiation factor eIF3 subunit
Cluster MI0410:
Q-value = 0.20 log10(P) = -6.92 log10(E) = 13.05 log10(Pevd) = 0.00
 YAL003W  EFB1 3 3 translation elongation factor eEF1beta
 YBR118W  TEF2 2 1 translation elongation factor eEF1 alpha-A chain, cytosolic
 YKL081W  TEF4 1 1 translation elongation factor eEF1, gamma chain
 YKR084C  HBS1 1 0 translation elongation factor eEF-1 alpha chain homolog
 YPL048W  CAM1 0 0 translation elongation factor eEF1 gamma homologue
 YPR080W  TEF1 2 1 translation elongation factor eEF1 alpha-A chain, cytosolic
Cluster MI0433:
Q-value = 0.40 log10(P) = -8.63 log10(E) = 4.98 log10(Pevd) = -0.05
 YDR004W  RAD57 3 1 DNA repair protein
 YDR076W  RAD55 2 2 DNA repair protein
 YER095W  RAD51 11 3 DNA repair protein
 YGL163C  RAD54 1 1 DNA-dependent ATPase of the SNF2P family
 YML032C  RAD52 5 1 recombination and DNA repair protein
Cluster MI0435:
Q-value = 0.90 log10(P) = -15.09 log10(E) = -2.48 log10(Pevd) = -5.29
 YCR092C  MSH3 3 3 DNA mismatch repair protein
 YDR097C  MSH6 3 3 DNA mismatch repair protein
 YMR167W  MLH1 4 4 DNA mismatch repair protein
 YNL082W  PMS1 4 4 DNA mismatch repair protein
 YOL090W  MSH2 5 4 DNA mismatch repair protein
Cluster MI0436:
Q-value = 1.00 log10(P) = -122.34 log10(E) = -108.77 log10(Pevd) = -99.00
 YBR081C  SPT7 13 13 involved in alteration of transcription start site selection
 YBR198C  TAF90 16 13 TFIID and SAGA subunit
 YDR145W  TAF61 14 13 TFIID and SAGA subunit
 YDR167W  TAF25 22 13 TFIID and SAGA subunit
 YDR176W  NGG1 23 13 general transcriptional adaptor or co-activator
 YDR392W  SPT3 14 13 general transcriptional adaptor or co-activator
 YDR448W  ADA2 21 13 general transcriptional adaptor or co-activator
 YGL112C  TAF60 19 13 TFIID and SAGA subunit
 YGR252W  GCN5 16 13 histone acetyltransferase
 YHR099W  TRA1 15 13 component of the Ada-Spt transcriptional regulatory complex
 YLR055C  SPT8 13 13 transcriptional adaptor or co-activator
 YMR236W  TAF17 20 13 TFIID and SAGA subunit
 YOL148C  SPT20 15 13 member of the TBP class of SPT proteins that alter transcription site selection
 YPL254W  HFI1 13 13 transcriptional coactivator
Cluster MI0438:
Q-value = 0.21 log10(P) = -36.17 log10(E) = 3.49 log10(Pevd) = -0.80
 YAL021C  CCR4 2 2 transcriptional regulator
 YCR093W  CDC39 4 3 nuclear protein
 YDL165W  CDC36 6 0 transcription factor
 YDL160C  DHH1 13 3 putative RNA helicase of the DEAD box family
 YER068W  MOT2 3 3 transcriptional repressor
 YFL028C  CAF16 1 1 ATP-binding cassette transporter family member
 YGR092W  DBF2 7 4 ser/thr protein kinase related to DBF20P
 YIL106W  MOB1 9 4 required for completion of mitosis and maintenance of ploidy
 YIL038C  NOT3 3 3 general negative regulator of transcription, subunit 3
 YJR122W  CAF17 3 2 CCR4 associated factor
 YKR036C  CAF4 0 0 CCR4 associated factor
 YNR052C  POP2 8 4 required for glucose derepression
 YPR072W  NOT5 4 3 component of the NOT protein complex
Cluster MI0442:
Q-value = 0.50 log10(P) = -5.78 log10(E) = 5.39 log10(Pevd) = -0.11
 YMR053C  STB2 2 1 SIN3P binding protein
 YNL330C  RPD3 4 1 histone deacetylase B
 YNL309W  STB1 2 1 SIN3P binding protein
 YOL004W  SIN3 8 3 transcription regulatory protein
Cluster MI0443:
Q-value = 0.30 log10(P) = -6.49 log10(E) = 10.45 log10(Pevd) = -0.00
 YDR253C  MET32 0 0 transcriptional regulator of sulfur amino acid metabolism
 YIR017C  MET28 7 2 transcriptional activator of sulfur amino acid metabolism
 YJR060W  CBF1 2 2 kinetochore protein
 YNL103W  MET4 3 2 transcriptional activator of sulfur metabolism
 YPL038W  MET31 1 0 transcriptional regulator of sulfur amino acid metabolism
Cluster MI0450:
Q-value = 0.60 log10(P) = -11.44 log10(E) = 1.17 log10(Pevd) = -1.91
 YCR093W  CDC39 4 3 nuclear protein
 YDL165W  CDC36 6 0 transcription factor
 YER068W  MOT2 3 3 transcriptional repressor
 YIL038C  NOT3 3 3 general negative regulator of transcription, subunit 3
 YPR072W  NOT5 4 3 component of the NOT protein complex
Cluster MI0464:
Q-value = 0.24 log10(P) = -31.21 log10(E) = 5.75 log10(Pevd) = -1.31
 YBR198C  TAF90 16 4 TFIID and SAGA subunit
 YCR042C  TSM1 1 1 component of TFIID complex
 YDR145W  TAF61 14 4 TFIID and SAGA subunit
 YDR167W  TAF25 22 9 TFIID and SAGA subunit
 YGL112C  TAF60 19 4 TFIID and SAGA subunit
 YGR274C  TAF145 2 1 TFIID subunit (TBP-associated factor), 145 kD
 YML098W  TAF19 4 2 TFIID subunit (TBP-associated factor), 19 kD
 YML015C  TAF40 5 2 TFIID subunit (TBP-associated factor), 40KD
 YMR227C  TAF67 0 0 TFIID subunit (TBP-associated factor), 67 kD
 YMR236W  TAF17 20 4 TFIID and SAGA subunit
 YPL129W  ANC1 2 1 TFIIF subunit (transcription initiation factor), 30 kD
 YPL011C  TAF47 2 0 component of the TBP-associated protein complex
Cluster MI0697:
Q-value = 1.00 log10(P) = -16.22 log10(E) = -8.39 log10(Pevd) = -8.43
 YDR176W  NGG1 23 5 general transcriptional adaptor or co-activator
 YDR448W  ADA2 21 5 general transcriptional adaptor or co-activator
 YGR252W  GCN5 16 5 histone acetyltransferase
 YHR099W  TRA1 15 5 component of the Ada-Spt transcriptional regulatory complex
 YOL148C  SPT20 15 5 member of the TBP class of SPT proteins that alter transcription site selection
 YPL254W  HFI1 13 5 transcriptional coactivator
Cluster MI0962:
Q-value = 1.00 log10(P) = -13.14 log10(E) = -6.06 log10(Pevd) = -6.42
 YBR081C  SPT7 13 4 involved in alteration of transcription start site selection
 YDR392W  SPT3 14 4 general transcriptional adaptor or co-activator
 YDR448W  ADA2 21 4 general transcriptional adaptor or co-activator
 YGL112C  TAF60 19 4 TFIID and SAGA subunit
 YHR099W  TRA1 15 4 component of the Ada-Spt transcriptional regulatory complex