The MEME Suite

Read a CHEN matrix file and convert to MEME format. You may concatenate files for more than one motif.

Reads concatenated CHEN files from standard input.

Concatenated CHEN files describe one or more motifs. Each motif has a header line and a position-weight matrix.

Sample Input

>NANOG
2       64      4       10
1       66      1       12
52      1       0       27
0       0       0       80
0       0       0       80
0       5       74      1
3       1       1       75
3       49      14      14
57      9       0       14
1       0       3       76
1       3       46      30
4       48      12      16
30      16      3       31
31      12      19      18
41      12      12      15
16      20      12      32
>OCT4
11      216     13      99
168     10      1       160
1       6       2       330
12      0       8       319
21      92      213     13
98      5       5       231
68      93      37      141
326     0       4       9
0       0       0       339
0       0       319     20
4       289     19      27
288     1       1       49
212     25      73      29
294     8       23      14
55      28      54      202
      

Option	Parameter	Description	Default Behaviour
General Options
-h		Prints a usage message and exits.	The program runs as normal.