LOCKER:          spm_v12

FILE:            /mit/spm_v12/README.athena

CONTENTS:        SPM 12 version locker

DESCRIPTION:     SPM is a software package designed for the analysis of brain
                 imaging data sequences. The sequences can be a series of
		 images from different cohorts, or time-series from the same
		 subject. The current release is designed for the analysis of
		 fMRI, PET, SPECT, EEG and MEG.

HOW TO RUN:

  COMMAND:	 add spm
                 spm-matlab
		 
		 from the MATLAB >> prompt:

                 spm                 (to launch the main GUI)
		 <command> <options> (to run SPM command <command>)

FROM UBUNTU PANEL:	 no

INTERFACES:	 GUI, MATLAB command-line utilities

VERSIONS:	 For Linux 64: SPM 12
                  
DEPENDENCIES:	 MATLAB

DATAFILES:	 Platform-independent

LICENSE SERVER:	 no

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SUPPORT ISSUES --

I/S SUPPORT:

  CONSULTING:	 none

  TRAINING:	 none

  DOCUMENTATION: 

local:       http://web.mit.edu/spm_v12/ReleaseNotes.pdf
             http://web.mit.edu/spm_v12/manual.pdf
author site: http://www.fil.ion.ucl.ac.uk/spm/doc/

OTHER SUPPORT:

  CONSULTING:	 (none)

 TRAINING: http://www.fil.ion.ucl.ac.uk/spm/course/video/
           https://www.youtube.com/watch?v=6Xn6NC6ifUY
	   http://andysbrainblog.blogspot.com/2012/10/spm-tutorial-1-basics.html

  WEB PAGE:        http://www.fil.ion.ucl.ac.uk/spm/

BUG REPORTS:	  Use sendbug

-------------------------------------------------------------------------
LEGAL ISSUES -- 

STATUS: GPL version 2 or later, see
        http://web.mit.edu/spm_v12/distrib/spm12/LICENCE.txt

 SITES:         any
 
 RESTRICTIONS:  
 
 DOCUMENTATION: 
                
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ABOUT THIS LOCKER --

MAINTAINER(S):	 swmaint (group), alexp

DIRECTORY STRUCTURE:

     spm12           - top level of distribution
       batches       - preprocessing files
       canonical     - canonical meshes
       compat        - utility files (compatibility issues)
       config        - configuration files
       EEGtemplates  - EEG templates
       external      - external files
       @file_array   - file array files
       @gifti        - GIfTI class files
       help          - help files
       man           - documentation
       matlabbatch   - MATLAB batch files
       @meeg         - meeg files
       @nifti        - NIFTI files
       rend          - render files
       @slover       - slover files
       spm_orthviews - spm_orthviews files
       src           - source code
       tests         - test examples
       toolbox       - tools
       tpm           - Neuromorphometrics 
       @xmltree      - XMLTree files

MODIFY HISTORY:
	11/9/15 - Alex Prengel
                  Created this README.athena, initial locker setup

MISCELLANEOUS:

Due to the way we configure MATLAB for SPM, the top level SPM
directory will stay on your matlabpath even if you launch MATLAB later
in the usual way (add matlab; matlab). If you don't want this, edit
your ~/matlab/startup.m file by removing the line:

addpath /afs/athena.mit.edu/software/spm_v12/distrib/spm12

but note that this will be readded if you subsequently launch as
add spm; spm-matlab.