Package: GenomeInfoDb Title: Utilities for manipulating chromosome and other 'seqname' identifiers Description: Contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order. Version: 1.14.0 Encoding: UTF-8 Author: Sonali Arora, Martin Morgan, Marc Carlson, H. Pagès Maintainer: Bioconductor Package Maintainer biocViews: Genetics, DataRepresentation, Annotation, GenomeAnnotation Depends: R (>= 3.1), methods, BiocGenerics (>= 0.13.8), S4Vectors (>= 0.9.25), IRanges (>= 1.99.26) Imports: stats, stats4, utils, RCurl, GenomeInfoDbData Suggests: GenomicRanges, Rsamtools, GenomicAlignments, BSgenome, GenomicFeatures, BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Dmelanogaster.UCSC.dm3.ensGene, RUnit, BiocStyle, knitr License: Artistic-2.0 Collate: utils.R rankSeqlevels.R assembly-utils.R available.species.R fetchExtendedChromInfoFromUCSC.R fetchSequenceInfo.R seqinfo.R seqlevelsStyle.R seqlevels-wrappers.R Seqinfo-class.R GenomeDescription-class.R mapGenomeBuilds.R zzz.R VignetteBuilder: knitr Video: http://youtu.be/wdEjCYSXa7w NeedsCompilation: no Packaged: 2017-10-30 23:51:42 UTC; biocbuild Built: R 3.4.1; ; 2018-01-19 22:40:05 UTC; unix