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| colSummarizeAvg | Summarize the column of matrices |
| colSummarizeAvgLog | Summarize the column of matrices |
| colSummarizeBiweight | Summarize the column of matrices |
| colSummarizeBiweightLog | Summarize the column of matrices |
| colSummarizeLogAvg | Summarize the column of matrices |
| colSummarizeLogMedian | Summarize the column of matrices |
| colSummarizeMedian | Summarize the column of matrices |
| colSummarizeMedianLog | Summarize the column of matrices |
| colSummarizeMedianpolish | Summarize the column of matrices |
| colSummarizeMedianpolishLog | Summarize the column of matrices |
| convert.group.labels | Summarize columns when divided into groups of rows |
| normalize.AffyBatch.quantiles.robust | Robust Quantile Normalization |
| normalize.quantiles | Quantile Normalization |
| normalize.quantiles.determine.target | Quantile Normalization using a specified target distribution vector |
| normalize.quantiles.in.blocks | Quantile Normalization carried out separately within blocks of rows |
| normalize.quantiles.robust | Robust Quantile Normalization |
| normalize.quantiles.use.target | Quantile Normalization using a specified target distribution vector |
| rcModelMedianPolish | Fit row-column model to a matrix |
| rcModelPLM | Fit row-column model to a matrix |
| rcModelPLMd | Fit robust row-column models to a matrix |
| rcModelPLMr | Fit robust row-column models to a matrix |
| rcModelPLMrc | Fit robust row-column models to a matrix |
| rcModelPLMrr | Fit robust row-column models to a matrix |
| rcModelWPLM | Fit row-column model to a matrix |
| rcModelWPLMr | Fit robust row-column models to a matrix |
| rcModelWPLMrc | Fit robust row-column models to a matrix |
| rcModelWPLMrr | Fit robust row-column models to a matrix |
| rma.background.correct | RMA Background Correction |
| subColSummarizeAvg | Summarize columns when divided into groups of rows |
| subColSummarizeAvgLog | Summarize columns when divided into groups of rows |
| subColSummarizeBiweight | Summarize columns when divided into groups of rows |
| subColSummarizeBiweightLog | Summarize columns when divided into groups of rows |
| subColSummarizeLogAvg | Summarize columns when divided into groups of rows |
| subColSummarizeLogMedian | Summarize columns when divided into groups of rows |
| subColSummarizeMedian | Summarize columns when divided into groups of rows |
| subColSummarizeMedianLog | Summarize columns when divided into groups of rows |
| subColSummarizeMedianpolish | Summarize columns when divided into groups of rows |
| subColSummarizeMedianpolishLog | Summarize columns when divided into groups of rows |
| subrcModelMedianPolish | Fit row-column model to a matrix |
| subrcModelPLM | Fit row-column model to a matrix |
| subrcModelWPLM | Fit row-column model to a matrix |