Survival Analysis


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Documentation for package ‘survival’ version 2.41-3

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A B C D E F G H I J K L M N O P Q R S T U V misc

-- A --

aareg Aalen's additive regression model for censored data
aeqSurv Adjudicate near ties in a Surv object
agreg.fit Cox model fitting functions
aml Acute Myelogenous Leukemia survival data
anova.coxph Analysis of Deviance for a Cox model.
anova.coxphlist Analysis of Deviance for a Cox model.
anova.survreg Regression for a Parametric Survival Model
anova.survreglist Regression for a Parametric Survival Model
as.character.Surv Create a Survival Object
as.data.frame.Surv Create a Survival Object
as.matrix.Surv Create a Survival Object
attrassign Create new-style "assign" attribute
attrassign.default Create new-style "assign" attribute
attrassign.lm Create new-style "assign" attribute

-- B --

basehaz Alias for the survfit function
bladder Bladder Cancer Recurrences
bladder1 Bladder Cancer Recurrences
bladder2 Bladder Cancer Recurrences

-- C --

cancer NCCTG Lung Cancer Data
cch Fits proportional hazards regression model to case-cohort data
cgd Chronic Granulotomous Disease data
cgd.raw Chronic Granulotomous Disease data
cgd0 Chronic Granulotomous Disease data
cipoisson Confidence limits for the Poisson
clogit Conditional logistic regression
cluster Identify clusters.
colon Chemotherapy for Stage B/C colon cancer
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
coxph Fit Proportional Hazards Regression Model
coxph.control Ancillary arguments for controlling coxph fits
coxph.detail Details of a Cox Model Fit
coxph.fit Cox model fitting functions
coxph.getdata Fit Proportional Hazards Regression Model
coxph.object Proportional Hazards Regression Object
coxph.penalty Fit Proportional Hazards Regression Model
coxph.wtest Compute a quadratic form

-- D --

dsurvreg Distributions available in survreg.

-- E --

extractAIC.coxph.penal Proportional Hazards Regression Object

-- F --

finegray Create data for a Fine-Gray model
flchain Assay of serum free light chain for 7874 subjects.
format.Surv Create a Survival Object
frailty Random effects terms
frailty.gamma Random effects terms
frailty.gaussian Random effects terms
frailty.t Random effects terms

-- G --

genfan Generator fans

-- H --

heart Stanford Heart Transplant data

-- I --

is.na.ratetable Ratetable reference in formula
is.na.Surv Create a Survival Object
is.ratetable Verify that an object is of class ratetable.
is.Surv Create a Survival Object

-- J --

jasa Stanford Heart Transplant data
jasa1 Stanford Heart Transplant data

-- K --

kidney Kidney catheter data

-- L --

labels.survreg Regression for a Parametric Survival Model
leukemia Acute Myelogenous Leukemia survival data
levels.tcut Factors for person-year calculations
lines.survexp Add Lines or Points to a Survival Plot
lines.survfit Add Lines or Points to a Survival Plot
logan Data from the 1972-78 GSS data used by Logan
logLik.coxph logLik method for a Cox model
logLik.survreg logLik method for a Cox model
lung NCCTG Lung Cancer Data

-- M --

Math.ratetable Verify that an object is of class ratetable.
Math.Surv Create a Survival Object
mgus Monoclonal gammapothy data
mgus1 Monoclonal gammapothy data
mgus2 Monoclonal gammapothy data
model.frame.coxph Model.frame method for coxph objects
model.frame.survreg Regression for a Parametric Survival Model
model.matrix.coxph Model.matrix method for coxph models
myeloid Acute myeloid leukemia

-- N --

neardate Find the index of the closest value in data set 2, for each entry in data set one.
nwtco Data from the National Wilm's Tumor Study

-- O --

Ops.ratetable Verify that an object is of class ratetable.
Ops.Surv Create a Survival Object
ovarian Ovarian Cancer Survival Data

-- P --

pbc Mayo Clinic Primary Biliary Cirrhosis Data
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
plot.aareg Plot an aareg object.
plot.cox.zph Graphical Test of Proportional Hazards
plot.survfit Plot method for 'survfit' objects
points.survfit Add Lines or Points to a Survival Plot
predict.coxph Predictions for a Cox model
predict.coxph.penal Predictions for a Cox model
predict.survreg Predicted Values for a 'survreg' Object
predict.survreg.penal Predicted Values for a 'survreg' Object
print.aareg Print an aareg object
print.cox.zph Test the Proportional Hazards Assumption of a Cox Regression
print.coxph Proportional Hazards Regression Object
print.coxph.null Fit Proportional Hazards Regression Model
print.coxph.penal Fit Proportional Hazards Regression Model
print.ratetable Ratetable reference in formula
print.summary.coxph Print method for summary.coxph objects
print.summary.survexp Print Survexp Summary
print.summary.survfit Print Survfit Summary
print.summary.survreg Regression for a Parametric Survival Model
print.Surv Create a Survival Object
print.survdiff Test Survival Curve Differences
print.survexp Compute Expected Survival
print.survfit Print a Short Summary of a Survival Curve
print.survreg Parametric Survival Model Object
print.survreg.penal Regression for a Parametric Survival Model
pspline Smoothing splines using a pspline basis
psplineinverse Smoothing splines using a pspline basis
psurvreg Distributions available in survreg.
pyears Person Years

-- Q --

qsurvreg Distributions available in survreg.
quantile.survfit Quantiles from a survfit object
quantile.survfitms Quantiles from a survfit object

-- R --

ratetable Ratetable reference in formula
ratetableDate Convert date objects to ratetable form
rats Rat treatment data from Mantel et al
rats2 Rat data from Gail et al.
residuals.coxph Calculate Residuals for a 'coxph' Fit
residuals.coxph.null Calculate Residuals for a 'coxph' Fit
residuals.coxph.penal Calculate Residuals for a 'coxph' Fit
residuals.survreg Compute Residuals for 'survreg' Objects
residuals.survreg.penal Compute Residuals for 'survreg' Objects
retinopathy Diabetic Retinopathy
rhDNase rhDNASE data set
ridge Ridge regression
rsurvreg Distributions available in survreg.

-- S --

stanford2 More Stanford Heart Transplant data
statefig Draw a state space figure.
strata Identify Stratification Variables
summary.aareg Summarize an aareg fit
summary.coxph Summary method for Cox models
summary.coxph.penal Fit Proportional Hazards Regression Model
summary.pyears Summary function for pyears objecs
summary.ratetable Ratetable reference in formula
Summary.Surv Create a Survival Object
summary.survexp Summary function for a survexp object
summary.survfit Summary of a Survival Curve
summary.survreg Parametric Survival Model Object
Surv Create a Survival Object
survConcordance Compute a concordance measure.
survConcordance.fit Compute a concordance measure.
survdiff Test Survival Curve Differences
survexp Compute Expected Survival
survexp.fit Compute Expected Survival
survexp.mn Census Data Sets for the Expected Survival and Person Years Functions
survexp.object Expected Survival Curve Object
survexp.us Census Data Sets for the Expected Survival and Person Years Functions
survexp.usr Census Data Sets for the Expected Survival and Person Years Functions
survfit Create survival curves
survfit.coxph Compute a Survival Curve from a Cox model
survfit.formula Compute a Survival Curve for Censored Data
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
survfit.object Survival Curve Object
survfitcoxph.fit A direct interface to the 'computational engine' of survfit.coxph
survfitms.object Survival Curve Object
survobrien O'Brien's Test for Association of a Single Variable with Survival
survReg Regression for a Parametric Survival Model
survreg Regression for a Parametric Survival Model
survreg.control Package options for survreg and coxph
survreg.distributions Parametric Survival Distributions
survreg.object Parametric Survival Model Object
survregDtest Verify a survreg distribution
survSplit Split a survival data set at specified times

-- T --

tcut Factors for person-year calculations
tmerge Time based merge for survival data
tobin Tobin's Tobit data
transplant Liver transplant waiting list

-- U --

untangle.specials Help Process the 'specials' Argument of the 'terms' Function.
uspop2 Projected US Population

-- V --

vcov.coxph Fit Proportional Hazards Regression Model
vcov.survreg Regression for a Parametric Survival Model
veteran Veterans' Administration Lung Cancer study

-- misc --

[.cox.zph Test the Proportional Hazards Assumption of a Cox Regression
[.coxph.penalty Fit Proportional Hazards Regression Model
[.ratetable Ratetable reference in formula
[.ratetable2 Ratetable reference in formula
[.Surv Create a Survival Object
[.survfit Compute a Survival Curve for Censored Data
[.tcut Factors for person-year calculations