elm2meme [options] <ELM file>+
Reads a tab separated quoted values file containing ELM regular expressions and convert them to MEME motifs where possible.
Reads ELM entries from the listed files.
ELM entries describe a motif as a regular expression. Not all can be converted into MEME motifs due to anchors or variable length.
"Accession" "ELMIdentifier" "FunctionalSiteName" "Description" "Regex" "Probability" "#Instances" "#Instances_in_PDB"
"ELME000321" "CLV_C14_Caspase3-7" "Caspase cleavage motif" "Caspase-3 and Caspase-7 cleavage site." "[DSTE][^P][^DEWHFYC]D[GSAN]" "0.00309374033071" "39" "0"
"ELME000172" "CLV_MEL_PAP_1" "Melanisation activation site" "Prophenoloxidase-activating proteinase (PAP) cleavage site ([ILV]-X-X-R-|-[FV]-[GS]-X)." "[ILV]..R[VF][GS]." "0.000105375572148" "12" "0"
"ELME000102" "CLV_NRD_NRD_1" "NRD cleavage site" "N-Arg dibasic convertase (NRD/Nardilysin) cleavage site (X-|-R-K or R-|-R-X)." "(.RK)|(RR[^KR])" "0.00746473248158" "2" "0"
"ELME000101" "CLV_PCSK_FUR_1" "PCSK cleavage site" "Furin (PACE) cleavage site (R-X-[RK]-R-|-X)." "R.[RK]R." "0.000508722921034" "13" "0"
| Option | Parameter | Description | Default Behaviour |
|---|---|---|---|
| General Options | |||
| -h | Prints a usage message and exits. | The program runs as normal. | |