The Net Advance of Physics:
BIOPHYSICS
BIOLOGICAL PHYSICS:
Types:
EVOLUTION;
GENETICS;
Type: BIOMECHANICS: see also
Swimming
:
Finite Element Analysis in Biology
Homepage of Biomesh.Org
Water Movement in Vascular Plants: A Primer
by Sanjay P. Sane and Amit K. Singh [
Journal of the Indian Institute of Science 91
, 233 (2011)]
An introduction to the hydrodynamics of locomotion on small scales
by Eric Lauga [Les Houches 2012]
Collective motion of cells: from experiments to models
by Elod Mehes and Tamas Vicsek [2014/03]
The Hydrodynamics of Active Systems
by Julia M. Yeomans [2015]
Bacterial Hydrodynamics
by Eric Lauga [2015/09]
A Novice Guide towards Human Motion Analysis and Understanding
by Ahmed Nabil Mohamed [2015/09]
An Updated Review of Methods and Advancements in Microvascular Blood Flow Imaging
by Cerine Lal and Martin J. Leahy [
Microcirculation 23
, 345 (2016)]
Active Brownian Particles in Complex and Crowded Environments
by Clemens Bechinger et al. [2016/02]
A brief introduction to the model microswimmer
Chlamydomonas reinhardtii
by Raphaël Jeanneret et al. [2016/06]
A Survey of Visual Analysis of Human Motion and Its Applications
by Qifei Wang [2016/08]
Human Mobility: Models and Applications
by Hugo Barbosa-Filho et al. [2017/10] 126 pp.
Fluid flows shaping organism morphology
by Karen Alim [2018/01]
Nobel Symposium 162: Microfluidics
edited by Johan Elf et al. [2017/12]
Modelling chemotaxis of microswimmers: from individual to collective behavior
by Benno Liebchen and H. Löwen [2018/02]
Mathematical models for chemotaxis and their applications in self-organisation phenomena
by Kevin J. Painter [2018/06]
Physical Models of Collective Cell Migration
by Ricard Alert and Xavier Trepat [2019/05]
The use of biophysical approaches to understand ciliary beating
by P. Cicuta [2020/01]
Recent advances in blood rheology: A review
by A. N. Beris et al. [2021/09]
Type: COMPUTATIONAL:
Computational Models For Epilepsy
by Roxana A. Stephanescu et al. [2012/01]
An Introduction to RNA Databases
by Marc P. Hoeppner et al. [2012/06]
Evolutionary Algorithms: Concepts, Designs, and Applications in Bioinformatics: Evolutionary Algorithms for Bioinformatics
by Ka-Chun Wong [2015/08]
Thirty eight things to do with live slime mould
by Andrew Adamatzky [2015/12]
Lecture notes on stochastic models in systems biology
by Peter S. Swain [2016/07]
Approximation and inference methods for stochastic biochemical kinetics - a tutorial review
by David Schnoerr et al. [
Journal of Physics A 50
, 093001 (2017)]
Fluid flows shaping organism morphology
by Karen Alim [2018/01]
Simulation of Morphogen and Tissue Dynamics
by M. D. Peters et al. [2018/06]
Algorithms for biosequence search: past, present and future
by Gregory Kucherov [2018/08]
Algorithmic Complexity in Computational Biology
by Davide Cirillo and Alfonso Valencia [2018/11]
Simulation and Inference Algorithms for Stochastic Biochemical Reaction Networks: From Basic Concepts to State-of-the-Art
by David J. Warne et al. [2018/12]
Deep Learning in Bioinformatics: Introduction, Application, and Perspective in Big Data Era
by Yu Li et al. [2019/03]
Physarum polycephalum: Smart network adaptation
by M. Le Verge-Serandour and K. Alim [2023/06]
Type: ECOLOGY:
Localized Structures in Dissipative Media: From Optics to Plant Ecology
by Mustapha Tlidi et al. [2014/08]
Statistical Mechanics of Ecological Systems: Neutral Theory and Beyond
by Sandro Azaele et al. [2015/06]
Type: EMBRYOLOGY:
A survey of mathematical models on somitogenesis
by H. Song [2023/10]
Type: EPIDEMIOLOGY:
Bagnoli 98/10;
Statistical physics of vaccination
by Zhen Wang et al. [
Physics Reports 664
, 1 (2016)]
Basic stochastic transmission models and their inference
by Tom Britton [2018/01]
Tutorial: Deriving the Efficient Influence Curve for Large Models
by Jonathan Levy [2019/03]
Toward Epidemic Thresholds on Temporal Networks: A Review and Open Questions
by Jack Leitch et al. [2019/10]
Stochastic epidemics in a heterogeneous community
by V. C. Tran [2020/04]
Disease Detectives: Using Mathematics to Forecast the Spread of Infectious Diseases
by H. Z. Brooks et al. [2020/07]
The SIR model of an epidemic
by W. G. Faris [2021/04]
Recent advances in epidemic modeling: Non-Markov stochastic models and their scaling limits
by R. Forien et al. [2021/06]
A review of commonly used compartmental models in epidemiology
by M. Mehdaoui [2021/10]
Type: HEARING:
The physics of hearing: fluid mechanics and the active process of the inner ear
by Tobias Reichenbach and A. J. Hudspeth [
Reports on Progress in Physics 77
, 7 (2014)]
Type: MEDICAL:
Neutron Therapy in the 21st Century
by Thomas K. Kroc and James S. Welsh [2014/09]
Accelerators for Medical Applications
by R. Bailey (ed.) [2015/06] CAS-CERN Accelerator School; 346 pp.
Fundamentals and advances in magnetic hyperthermia
by Elio Alberto Périgo et al. [
Applied Physics Reviews 2
, 041302 (2015)] 104 pp.
An Updated Review of Methods and Advancements in Microvascular Blood Flow Imaging
by Cerine Lal and Martin J. Leahy [
Microcirculation 23
, 345 (2016)]
Histological coherent Raman imaging: a prognostic review
by Marcus T. Cicerone and Charles H. Camp Jr. [2017/09]
Recent Advances in Computational Modeling of Thrombosis
by Sumith Yesudasan and Rodney D. Averett [2018/01]
Advances in optical coherence tomography for dermatology
by Olivier Levecq et al. [2018/04]
Modeling water transport processes in dialysis
by Marina V. Voinova [2018/05]
Magnetic Nanoparticles in Nanomedicine
by Kai Wu et al. [2018/11]
The Tear Turnover and Tear Clearance Tests: A Review
by Izabela K. Garaszczuk et al. [
Expert Review of Medical Devices 15
, 219 (2018)]
Fractional Calculus in Pharmacokinetics
by Pantelis Sopasakis et al. [
Journal of Pharmacokinetics and Pharmacodynamics 45
, 107 (2018)]
Advances in Microwave Near-Field Imaging: Prototypes, Systems, and Applications
by Wenyi Shao [2019/09]
A review of complex-systems approaches to cancer networks
by A. Uthamacumaran [2020/09]
Mathematical models of leukæmia and its treatment: A review
by S. Chulián et al. [2020/11]
A review of mathematical and computational methods in cancer dynamics
by A. Uthamacumaran and H. Zenil [2022/01]
Positronium physics and biomedical applications
by S. D. Bass et al. [2023/02]
Type: MOLECULAR:
An Introduction to Biomolecular Simulations and Docking
by Cameron Mura and Charles E. McAnany [2014/07]
Approximation and inference methods for stochastic biochemical kinetics - a tutorial review
by David Schnoerr et al. [
Journal of Physics A 50
, 093001 (2017)]
Single-molecule techniques in biophysics: a review of the progress in methods and applications
by Helen Miller et al. [2017/04]
Single-molecule kinetics in living cells
by Johan Elf and Irmeli Barkefors [2018/09]
Simulation and Inference Algorithms for Stochastic Biochemical Reaction Networks: From Basic Concepts to State-of-the-Art
by David J. Warne et al. [2018/12]
Type: MORPHOGENESIS:
Simulation of Morphogen and Tissue Dynamics
by M. D. Peters et al. [2018/06]
Type: OPTHAMOLOGY: Re: LASERS: Introductory:
Conlan 98;
Type: RADIOLOGY:
X-ray microtomography in biology
by Ryuta Mizutani and Yoshio Suzuki [
Micron 43,
104 (2016)]
A Review of Tomographic Reconstruction Techniques for Computed Tomography
by Sanam Assili [2018/08]
Dose Delivery Concept and Instrumentation
by Simona Giordanengo and Marco Donetti [2018/03]
Type: SYSTEMS:
Key challenges facing data-driven multicellular systems biology
by Paul Macklin [2018/06]
Aspects:
AMPHIPHILIC MEMBRANES;
BIOLOGICAL NETWORKS;
BIOPOLYMERS;
CHROMATIN;
IMMUNE NETWORKS;
NETWORKS in general;
NEURAL NETS;
Aspects: BIOFILMS:
The Physics of Biofilms -- An Introduction
by Marco G. Mazza [
Journal of Physics D 49,
, 203001 (2016)]
Aspects: BIOSENSORS:
Diamond for biosensor applications
by C. E. Nebel et al. [2020/05]
A review on plasmonic nano-biosensors for virus detection, with a focus on coronavirus
by M. M. Hassan et al. [2020/12]
Aspects: CELLS:
Cell biology: Networks, regulation, pathways
by Gasper Tkacik and William Bialek [2007/12]
Physics of adherent cells
by Ulrich S. Schwarz and Samuel S. Safran [
Reviews of Modern Physics 85
, 1327 (2013)]
Collective motion of cells: from experiments to models
by Elod Mehes and Tamas Vicsek [2014/03]
Criticality in Cell Differentiation
by Indrani Bose and Mainak Pal [2016/12]
100 years after Smoluchowski: stochastic processes in cell biology
by David Holcman and Zeev Schuss [2016/12]
The statistical physics of active matter: from self-catalytic colloids to living cells
by Étienne Fodor and M. Cristina Marchetti [2017/08]
Protein Pattern Formation
by Erwin Frey et al. [2018/01]
Continuum models of collective cell migration
by Shiladitya Banerjee and M. Cristina Marchetti [2018/05]
Physics and modelling of intracellular diffusion
by Svyatoslav Kondrat [2018/10]
[Cell] Membrane-Mediated Interactions
by Anne-Florence Bitbol et al. [2019/03]
Physical Models of Collective Cell Migration
by Ricard Alert and Xavier Trepat [2019/05]
Key Biology You Should Have Learned in Physics Class: Using Ideal-Gas Mixtures to Understand Biomolecular Machines
by Daniel M. Zuckerman [2019/06]
The Recent Advances in the Mathematical Modelling of Human Pluripotent Stem Cells
by L. E. Wadkin et al. [2019/09]
Contour Models of Cellular Adhesion
by Luca Giomi [2019/10]
Living cells on the move
by R. Alert and X. Trepat [2021/06]
Aspects: CHIRALITY:
Recent Progress in Chirality Research Using Circularly Polarized Light
by Tsubasa Fukue [2010/09]
Aspects: CRYSTALS:
Residual Stress and Strain in Biocrystals
by E. Seknazi and B. Pokroy [
Advanced Materials 30
, 1707263 (2018)]
Aspects: DELAYS:
Introduction to [Biological Population] Delay Models and Their Wave Solutions
by Majid Bani-Yaghoub [2017/01]
Aspects: DNA and RNA MOLECULES (& CELL NUCLEUS):
Single DNA conformations and biological function
by Ralf Metzler et al. [2006/09]
Physical descriptions of the bacterial nucleoid at large scales, and their biological implications
by Vincenzo G. Benza et al. [2012/04]
An Introduction to RNA Databases
by Marc P. Hoeppner et al. [2012/06]
Flexibility of nucleic acids: from DNA to RNA
by Bao Lei et al. [2015/09]
Use of topology in physical problems
by Somendra M. Bhattacharjee [2015/12]
The physicist's guide to one of biotechnology's hottest new topics: CRISPR-Cas
by Melia E. Bonomo and Michael W. Deem [2017/12]
Recent Advances on the Non-Coherent Band Surgery Model for Site-Specific Recombination
by Allison H. Moore and Mariel Vazquez [2018/10]
Review on DNA Cryptography
by Mandrita Mondal and Kumar S. Ray [2019/04]
What do we know about DNA mechanics so far?
by A. Aggarwal et al. [2020/06]
Aspects: ELECTROCARDIOGRAPHY:
ECG Feature Extraction Techniques - A Survey Approach
by S. Karpagachelvi et al. [
Int'l J. Comp. Sci. & Info. Sec'ty. 8
, (2010)]
Aspects: ENZYMES:
Enzyme Kinetics at the Molecular Level
by Arti Dua [
Resonance 24
, 297 (2019)]
Aspects: ION CHANNELS:
Computing the Field in Proteins and Channels
by Bob Eisenberg [
J. Membrane Biol. 150
, 1 (1996)]
Crowded Charges in Ion Channels
by Bob Eisenberg [2010/09]
Ion Channels, Natural Nanovalves
by Bob Eisenberg [2012/06]
Aspects: MIGRATION:
Physical Models of Collective Cell Migration
by Ricard Alert and Xavier Trepat [2019/05]
Aspects: MONTE CARLO METHODS:
Markov-Chain Monte Carlo Methods for Simulations of Biomolecules
by Bernd A. Berg [
Springer Lecture Notes in Physics 736
, 319 (2008)]
Aspects: NEUROLOGY:
See also
NEURAL NETS
A primer on information theory, with applications to neuroscience
by Felix Effenberger [2013/04]
Burst [of neuron activity] detection methods
by E. Cotterill and S. J. Eglen [2018/02]
Modelling the correlated activity of neural populations: a review
by Christophe Gardella et al. [2018/06]
A Review on Understanding Brain, Memory Retention and Recall Processes Using EEG and fMRI Techniques
by Qazi Emad-Ul-Haq et al. [2019/05]
Review of Newman's Analytical Series [of articles] on Disk Electrodes
by Boshuo Wang and James D. Weiland [2019/08] For neuroscientists unfamiliar with the electrochemistry literature.
How is information transmitted in a nerve?
by M. Peyrard [2020/08]
Aspects: ORIGINS OF LIFE:
Origins of Life: A Problem for Physics
by Sara I. Walker [2017/05]
Aspects: SEQUENCING:
Speed 2003/04;
Physical approaches to DNA sequencing and detection
by Michael Zwolak and Massimiliano Di Ventra [2007/08]
The physicist's guide to one of biotechnology's hottest new topics: CRISPR-Cas
by Melia E. Bonomo and Michael W. Deem [2017/12]
Aspects: SIMULATIONS:
Rodriguez 2006/06;
Aspects: SINGLE-MOLECULE EXPERIMENTS:
Single-molecule experiments in biological physics: methods and applications
by Felix Ritort [
J. Phys. C 18
, R531 (2006)]
The Physics of Life: one molecule at a time
by Mark C. Leake [2012/11]
Aspects: SOFT MATERIALS:
Effective Interactions in Soft Materials
by Alan R. Denton [2007/11]
Stochastic thermodynamics, fluctuation theorems, and molecular machines
by Udo Seifert [2012/05]
The statistical physics of active matter: from self-catalytic colloids to living cells
by Étienne Fodor and M. Cristina Marchetti [2017/08]
Aspects: SOLITONS:
Localized Structures in Dissipative Media: From Optics to Plant Ecology
by Mustapha Tlidi et al. [2014/08]
Aspects: VIRUSES:
Mechanisms of virus assembly
by Jason D. Perlmutter and Michael F. Hagan [2014/07]
Re: BAYESIAN STATISTICS:
Approximation and inference methods for stochastic biochemical kinetics - a tutorial review
by David Schnoerr et al. [
Journal of Physics A 50
, 093001 (2017)]
Re: CELLULAR AUTOMATA:
Bagnoli 98/10;
Re: COMPLEXITY:
Parisi 94/12;
Criticality and dynamical scaling in living systems
by Miguel A. Muñoz [2017/12]
Algorithmic Complexity in Computational Biology
by Davide Cirillo and Alfonso Valencia [2018/11]
Re: FRACTIONAL CALCULUS:
Fractional Calculus in Pharmacokinetics
by Pantelis Sopasakis et al. [
Journal of Pharmacokinetics and Pharmacodynamics 45
, 107 (2018)]
Re: HELICES:
Cahill 2005/02;
Re: LASERS:
Tricks of the Light: The Remarkable Power of Laser Tweezers to Dissect Complex Biological Questions
by Mark C. Leake [2018/12]
Re: NOISE:
The chaos within: exploring noise in cellular biology
by Iain G. Johnston [
Significance 9
, 17 (2012)]
Stochasticity or Noise in Biochemical Reactions
by Zachary Fox and Brian Munsky [2017/08]
Re: p-ADIC MATHEMATICS:
p
-Adic Mathematical Physics: The First 30 Years
by Branko Dragovich et al. [2017/05]
Re: PARTICLE ACCELERATORS:
Medical Applications [of Particle Accelerators]
by C. Biscari and L. Falbo [2013/08]
Re: PLASMAS:
Plasma medicine: A brief introduction
by M. Laroussi [2021/06]
Cold Gas Plasma Sources and the Science behind their Applications in Biology and Medicine
by M. Laroussi [2021/06]
Re: STATISTICAL MECHANICS:
Chemotaxis: How a Small Organism Finds a Food Source
by Andrea Schmidt [On Mehran Kardar's stat mech homepage at MIT] Random walk for high-school students.
A First Exposure to Statistical Mechanics for Life Scientists:
by Hernan G. Garcia et al. [2007/08]
Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport
by T. Chou et al. [2011/10]
Stochastic thermodynamics, fluctuation theorems, and molecular machines
by Udo Seifert [2012/05]
First Passage processes in cellular biology
by Srividya Iyer-Biswas and Anton Zilman [2015/03]
Lecture notes on stochastic models in systems biology
by Peter S. Swain [2016/07]
The statistical physics of active matter: from self-catalytic colloids to living cells
by Étienne Fodor and M. Cristina Marchetti [2017/08]
Bacterial growth: a statistical physicist's guide
by Rosalind J. Allen and Bartlomiej Waclaw [2018/12]
Simulation and Inference Algorithms for Stochastic Biochemical Reaction Networks: From Basic Concepts to State-of-the-Art
by David J. Warne et al. [2018/12]
Nonequilibrium physics in biology
by X.-N. Fang et al. [2020/12]
Re: THERMODYNAMICS:
Key Biology You Should Have Learned in Physics Class: Using Ideal-Gas Mixtures to Understand Biomolecular Machines
by Daniel M. Zuckerman [2019/06]
Re: TURBULENCE:
Ross 95+;
THE NET ADVANCE OF PHYSICS