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Chen, Z. & Wilson, M. A. Deciphering Neural Codes of Memory during Sleep. Trends Neurosci (2017). doi:10.1016/j.tins.2017.03.005


Chen, Z., Grosmark, A. D., Penagos, H. & Wilson, M. A. Uncovering representations of sleep-associated hippocampal ensemble spike activity. Sci Rep 6, 32193 (2016).

Agarwal, R., Chen, Z., Kloosterman, F., Wilson, M. A. & Sarma, S. V. A Novel Nonparametric Approach for Neural Encoding and Decoding Models of Multimodal Receptive Fields. Neural Comput 28, 1356–1387 (2016).

Varela, C. et al. Tracking the Time-Dependent Role of the Hippocampus in Memory Recall Using DREADDs. PLoS One 11, e0154374 (2016).

Muindi, F. et al. Electrical stimulation of the parabrachial nucleus induces reanimation from isoflurane general anesthesia. Behav Brain Res 306, 20–25 (2016).

Linderman, S. W., Johnson, M. J., Wilson, M. A. & Chen, Z. A Bayesian nonparametric approach for uncovering rat hippocampal population codes during spatial navigation. J Neurosci Methods 263, 36–47 (2016).


Remondes, M. & Wilson, M. A. Slow-gamma Rhythms Coordinate Cingulate Cortical Responses to Hippocampal Sharp-Wave Ripples during Wakefulness. Cell Rep 13, 1327–1335 (2015)

Gomperts SN, Kloosterman F, Wilson MA (2015) "VTA neurons coordinate with the hippocampal reactivation of spatial experience." eLife 10.7554/eLife.05360.

Lewis LD, Voigts J, Flores FJ, Schmitt LI, Wilson MA, Halassa MM, Brown EN (2015) "Thalamic reticular nucleus induces fast and local modulation of arousal state." eLife 10.7554/eLife.08760.

Flores, F. J. et al. A PK-PD model of ketamine-induced high-frequency oscillations. J Neural Eng 12, 056006 (2015).

Duan AR, Varela C, Zhang Y, Shen Y, Xiong L, Wilson MA, Lisman J (2015) "Delta frequency optogenetic stimulation of the thalamic nucleus reuniens is sufficient to produce working memory deficits: relevance to schizophrenia." Biol Psychiatry 77(12): 1098-107.

Wilson MA, Varela C, Remondes M (2015) "Phase organization of network computations." Curr Opin Neurobiol 31: 250-3.

Van Dort, C. J. et al. Optogenetic activation of cholinergic neurons in the PPT or LDT induces REM sleep. Proc Natl Acad Sci U S A 112, 584–589 (2015).


Halassa MM., Chen Z, Wimmer RD, Brunetti PM, Zhao S, Zikopoulos B, Wang F, Brown EN, Wilson MA (2014) "State-Dependent Architecture of Thalamic Reticular Subnetworks." Cell 158: 808–821.

Seigle JH, Wislon MA (2014) "Enhancement of encoding and retrieval functions through theta phase-specific manipulation of hippocampus." eLife 3: e03061.

Chen Z, Gomperts SN, Yamamoto J, Wilson MA (2014). "Neural representation of spatial topology in the rodent hippocampus." Neural Computation 26:1-39.


Remondes M, Wilson MA (2013). "Cingulate-hippocampus coherence and trajectory coding in a sequential choice task." Neuron 80: 1277-1289.

Suh J, Foster DJ, Davoudi H, Wilson MA, Tonegawa S (2013). "Impaired hippocampal ripple-associated reply in a mouse model of schizophrenia." Neuron 80: 484-493.

Kloosterman F, Layton SP, Chen Z, Wilson MA (2013). "Bayesian decoding using unsorted spikes in the rat hippocampus." J Neurophysiol 111: 217-227.

Varela C, Kumar S, Yang JY, Wilson MA (2013). "Anatomical subtrates for direct interactions between hippocampus, medial prefrontal cortex, and nucleus reuniens." Brain Struct Funct 219: 911-929.


Bendor D, Wilson MA (2012). "Biasing the content of hippocampal replay during sleep." Nat Neurosci 15: 1439-1444.

Chen Z, Kloosterman F, Brown EN, Wilson MA (2012). "Uncovering spatial topology represented by rat hippocampal population neuronal codes." J Comp Neurosci 33: 227-255.


Sarma SV, Nguyen DP, Czanner G, Wirth S, Wilson MA, Suzuki W, Brown EN (2011). "Computing confidence intervals for point process models." Neural Computation 23: 2731-2745.


Ego-Stengel V, Wilson MA (2010). "Disruption of ripple-associated hippocampal activity during rest impairs spatial learning in the rat." Hippocampus 20: 1-10.

Vijayan S, Hale GJ, Moore CI, Brown EN, Wilson MA (2010). "Activity in the barrel cortex during active behavior and sleep." J Neurophysiol 103: 2074-2084.


Davidson TJ, Kloosterman F, Wilson MA (2009). "Hippocampal replay of extended experience." Neuron 63: 497-507.

Nguyen DP, Wilson MA, Brown EN, Barbieri R (2009). "Measuring instantaneous frequency of local field potential oscillations using the Kalman smoother." J Neurosci Methods 184: 365-74.

Nguyen DP, Kloosterman F, Barbieri R, Brown EN, Wilson MA (2009). "Characterizing the dynamic frequency strucutre of fast oscillations in the rodent hippocampus." Front Integr Neurosci 3: 11.

Nguyen DP, Layton SP, Hale G, Gomperts SN, Davidson TJ, Kloosterman F, Wilson MA (2009). "Micro-drive array for chronic in vivo recording: tetrode assembly." J Vis Exp 26 pii: 1098.

Kloosterman F, Davidson TJ, Gomperts SN, Layton SP, Hale G, Nguyen DP, Wilson MA (2009). "Micro-drive array for chronic in vivo recording: drive fabrication." J Vis Exp 26 pii:1094.

Chen Z, Vijayan S, Barbieri R, Wilson MA, Brown EN (2009). "Discrete- and continuous-time probabilistic models and algoirhtms for inferring neuronal UP and DOWN states." Neural Computing 21: 1797-862.


Nguyen DP, Barbieri R, Wilson MA, Brown EN (2008). "Instantaneous frequency and amplitude modulation of EEG in the hippocampus reveals state dependent temporal structure." Conf Proc IEEE Eng Med Biol Soc 1711-5.

Miller EK, Wilson MA (2008). "All my circuits: using multiple electrodes to understand functioning neural networks." Neuron 60: 483-8.

Yamamoto J, Wilson MA (2008). "Large-scale chronically implantable precision motorized microdrive array for freely behaving animals." J Neurophysiol 100: 2430-40.

Ji D, Wilson MA (2008). "Firing rate dynamics in the hippocampus induced by trajectory learning." J Neurosci 28: 4679-89.


Foster DJ, Wilson MA (2007). "Hippocampal theta sequences." Hippocampus 17: 1093-9.

McHugh TJ, Jones MW, Quinn JJ, Balthasar N, Coppari R, Elmquist JK, Fanselow MS, Wilson MA, Tonegawa S (2007). "Dentate gyrus NMDA receptors mediate rapid pattern separation in the hippocampal network." Science 317: 94-9.

Ji D, Wilson MA (2007). "Coordinated memory replay in the visual cortex and hippocampus during sleep." Nature Neuroscience 10: 100-7.

Ergun A, Barbieri R, Eden U, Wilson MA, Brown EN (2007). "Construction of point process adaptive filter algorithms for neural systems using sequential Monte Carlo methods." IEEE Trans Neural Syst Rehab Eng 54: 419-428.


Ego-Stengel V, Wilson MA (2006). "Spatial selectivity and theta phase precession in CA1 interneurons." Hippocampus 17: 161-74.

Foster DJ, Wilson MA (2006). "Reverse replay of behavioural sequences in hippocampal place cells during the awake state." Nature 440: 680-3.


Jones MW, Wilson MA (2005). "Theta rhythms coordinate hippocampal-prefrontal interactions in a spatial memory task." PLoS Biol 3: 2187-99.

Jones MW, Wilson MA (2005). "Phase precession of medial prefrontal cortical activity relative to the hippocampal theta rhythm." Hippocampus 15: 867-73.

Siapas AG, Lubenov E, Wilson MA (2005). "Prefrontal phase-locking to hippocampal theta oscillations." Neuron 46: 141-51.

Barbieri R, Wilson MA, Frank LM, Brown EN (2005). "An analysis of hippocampal spatio-temporal representation using a Bayesian algorithm for neural spike train decoding." IEEE Trans Neural Syst Rehab Eng 13: 131-6.

Okatan M, Wilson MA, Brown EN (2005). "Analyzing functional connectivity using a network likelihood model of ensemble neural spiking activity." Neural Computing 17: 1927-61.


Lee AK, Wilson MA (2004). "A combinatorial method for analyzing sequential firing patterns involving an arbitrary number of neurons based on relative time order." J Neurophys 92: 2555-73.

Nakazawa K, McHugh TJ, Wilson MA, Tonegawa S (2004). "NMDA receptors, place cells and hippocampal spatial memory." Nature Rev Neurosci 5: 361-72.

Barbieri R, Fram LM, Nguyen DP, Quirk MC, Solo V, Wilson MA, Brown EN (2004). "Dynamic analyses of information encoding by neural ensembles." Neural Computation 16: 277-307.


Nakazawa K, Sun LD, Quirk MC, Rondi-Reig L, Wilson MA, Tonegawa S (2003). "Hippocampal CA3 NMDA receptors are crucial for memory acquisition of one-time experience." Neuron 38: 305-15.


Lee AK, Wilson MA (2002). "Memory of sequential experience in the hippocampus during slow wave sleep." Neuron 36: 1183-94.

Nakazawa K, Quirk MC, Chitwood RA, Watanabe M, Yeckel MF, Sun LD, Kato A, Carr CA, Johnston D, Wilson MA, Tonegawa S (2002). "Requirement for hippocampal CA3 NMDA receptors in associative memory recall." Science 297: 211-8.

Mehta MR, Lee AK, Wilson MA (2002). "Role of experience and oscillations in transforming a rate code into a temporal code." Nature 417: 741-6.

Frank LM, Eden UT, Solo V, Wilson MA, Brown EN (2002). "Contrasting patterns of receptive field plasticity in the hippocampus and the entorhinal cortex: an adaptive filtering approach." J Neurosci 22: 3817-30.

Wilson MA (2002). "Hippocampal memory formation, plasticity, and the role of sleep." Neurobio Learn Mem 78: 565-9.


Kang H, Sun LD, Atkins CM, Soderling TR, Wilson MA, Tonegawa S (2001). "An important role of neural activity-dependent CaMKIV signaling in the consolidation of long-term memory." Cell 106: 771-83.

Brown EN, Nguyen DP, Frank LM, Wilson MA, Solo V (2001). "An analysis of neural receptive field plasticity by point process adaptive filtering." Proc Nat Acad Sci 9: 12261-6.

Frank LM, Brown EN, Wilson MA (2001). "A comparison of the firing properties of putative excitatory and inhibitory neuron from CA1 and the entorhinal cortex of the awake behaving rat." J Neurophys 86: 2029-40

Louie K, Wilson MA (2001). "Temporally structured REM sleep replay of awake hippocampal ensemble activity." Neuron 29: 145-56.

Akbarian S, Bates B, Liu RJ, Skirboll SL, Pejchal T, Coppola V, Sun LD, Fan G, Kucera J, Wilson MA, Tessarollo L, Kosofsky BE, Taylor JR, Bothwell M, Nestler EJ, Aghajanian GK, Jaenisch R (2001). "Neurotrophin-3 modulates noradrenergic neuron function and opiate withdrawal." Mol Psychiatry 6: 593-604.

Yu H, Saura CA, Choi S, Sun LD, Yang X, Handler M, Kawarabayashi T, Younkin L, Fedeles B, Wilson MA, Younkin S, Kandel ER, Kirkwood A, Shen J (2001). "APP processing and synaptic plasticity in presenilin-1 conditional knockout mice." Neuron 31: 713-26.

Barbieri R, Frank LM, Quirk MC, Wilson MA, Brown EN (2001). "Diagnostic methods for statistical models of place cell activity." Neurocomputing 38: 1087-93.

Barbieri R, Frank LM, Quirk MC, Wilson MA, Brown EN (2001). "Construction and analysis of non-Poisson stimulus-response models of neural spiking activity." J Neurosci Meth 105: 25-37.

Quirk MC, Blum KE, Wilson MA (2001). "Experience-dependent changes in extracellular spike amplitude may reflect regulation of dendritic action potential back-propagation in rat hippocampal pyramidal cells." J Neurosci 21: 240-8.


Barbieri R, Frank LM, Quirk MC, Wilson MA, Brown EN (2000). "A time-dependent analysis of spatial information encoding in the rat hippocampus." Neurocomputing 32-33: 629-35.

Mehta MR, Wilson MA (2000). "From hippocampus to V1: effect of LTP on spatio-temporal dynamics of receptive fields." Neurocomputing 32-33: 905-11.

Frank LM, Brown EN, Wilson MA (2000). "Trajectory encoding in the hippocampus and entorhinal cortex." Neuron 27: 169-78.

Mehta MR, Quirk MC, Wilson MA (2000). "Experience-dependent asymmetric shape of hippocampal receptive fields." Neuron 25: 707-15.

Huerta PT, Sun LD, Wilson MA, Tonegawa S (2000). "Formation of temporal memory requires NMDA receptors with CA1 pyramidal cells." Neuron 25: 473-80.


Quirk MC, Wilson MA (1999). "Interaction between spike waveform classification and temporal sequence detection." J Neurosci Meth 94: 41-52.

Siapas AG, Wilson MA (1998). "Coordinated interactions between hippocampal ripples and cortical spindles during slow-wave sleep." Neuron 21: 1123-8.

Brown EN, Frank LM, Tang D, Quirk MC, Wilson MA (1998). "A statistical paradigm for neural spike train decoding applied to position prediction from ensemble firing patterns of rat hippocampal place cells." J Neurosci 18: 7411-25.

Wilson MA, Tonegawa S (1997). "Synaptic plasticity, place cells, and spatial memory: study with second generation knockouts." Trends Neurosci 20: 102-106.

Wilson MA (1996). "Dynamics of hippocampal memory formation in waking and sleep states." J Physiol (Paris) 90: 351-2.

McHugh TJ, Blum KE, Tsien JZ, Tonegawa S, Wilson MA (1996). "Impaired hippocampal representation of space in CA1-specific NMDAR1 knockout mice." Cell 87: 1339-49.

Skaggs WE, McNaughton BL, Wilson MA, Barnes CA (1996). "Relationship between the hippocampal theta rhythm and spatial firing of CA1 pyramidal cells." Hippocampus 6: 149-72.

Gray CM, Maldanado PE, Wilson MA, McNaughton BL (1995). "Tetrodes markedly improve the reliability and yield of multiple single-unit isolation from multi-unit recording in cat striate cortex." J Neurosci Meth 63: 43-54.

Wilson MA, McNaughton BL (1994). "Reactivation of hippocampal ensemble memories during sleep." Science 265: 676-679.

Wilson MA, McNaughton BL (1993). "Dynamics of the hippocampal ensemble code for space." Science 261: 1055-58.

Wilson MA, Bower JM (1992). "Cortical oscillations and temporal interactions in a computer simulation of piriform cortex." J Neurophys 67: 981-95.

Wilson MA, Bower JM (1992). "Computer simulations of oscillatory behavior in visual cerebral cortex." Neural Computation 3: 415-9.


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