Ben Lengerich

Ben Lengerich

Hello! I'm a postdoc in the Kellis Lab at MIT CSAIL and the Broad Institute. I recently completed my PhD from the CS Department at Carnegie Mellon University, advised by Prof. Eric Xing. I've also been very blessed to spend time working with Rich Caruana at Microsoft Research (2019, 2020) and Chris Potts at Roam Analytics (2017). My work has been supported by the CMLH Fellowship.

Research Interests: Motivated by the promise of precision medicine and focused on methodology for uncovering meaningful patterns from complex data, which often contain heterogeneous samples with conflicting patterns. My thesis is focused on sample-specific models -- since we are often interested in sample-specific infereces, can we estimate models for each individual sample? For more, please refer here.

Email address: blengeri@mit.edu
Office: D510 Stata Center

News

Defended my PhD Thesis Sample-Specific Models for Precision Medicine. Thanks to my thesis committee of Eric Xing, Zico Kolter, Ziv Bar-Joseph, Rich Caruana, and Manolis Kellis for all of their help.

December 2020

Our pre-print "Distentangling Increased Testing from Covid-19 Epidemic Spread" is now on on Medrxiv.

July 10, 2020

Our pre-print "On Dropout, Overfitting, and Interaction Effects" is now on on Arxiv.

July 2, 2020

Our pre-print "Discriminative Subtyping of Lung Cancers" is now on on Medrxiv.

June 26, 2020

I'll be (virtually) heading back to MSR this summer to continue work with Rich Caruana on models of mortality risk.

March 4, 2020
February 18, 2020

Selected Publications

Purifying Interaction Effects with the Functional ANOVA: An Efficient Algorithm for Recovering Identifiable Additive Models
Benjamin J. Lengerich, Sarah Tan, Chun-Hao Chang, Giles Hooker, Rich Caruana
Abstract Pre-print Paper Cite
AISTATS 2020
Learning Sample-Specific Models with Low-Rank Personalized Regression
Benjamin J. Lengerich, Bryon Aragam, Eric P. Xing
Abstract Pre-print Paper Poster Code Cite
NeurIPS 2019
Retrofitting Distributional Embeddings to Knowledge Graphs with Functional Relations
Benjamin J. Lengerich, Andrew L. Maas, Christopher Potts
Abstract Paper Pre-print Code
COLING 2018
Personalized Regression Enables Sample-Specific Pan-Cancer Analysis
Benjamin J. Lengerich, Bryon Aragam, Eric P. Xing
Abstract Paper Pre-print Slides Video Code Cite
ISMB 2018

A more complete list of my publications can be found here.