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| Anova | A filter function for Analysis of Variance |
| area | Class "rowROC" |
| area-method | Class "rowROC" |
| AUC | Class "rowROC" |
| AUC-method | Class "rowROC" |
| colFtests | t-tests and F-tests for rows or columns of a matrix |
| colFtests-method | t-tests and F-tests for rows or columns of a matrix |
| colttests | t-tests and F-tests for rows or columns of a matrix |
| colttests-method | t-tests and F-tests for rows or columns of a matrix |
| coxfilter | A filter function for univariate Cox regression. |
| cv | A filter function for the coefficient of variation. |
| dist2 | Calculate an n-by-n matrix by applying a function to all pairs of columns of an m-by-n matrix. |
| eSetFilter | A function to filter an eSet object |
| fastT | t-tests and F-tests for rows or columns of a matrix |
| featureFilter | Filtering of Features in an ExpressionSet |
| filtered_p | Compute and adjust p-values, with filtering |
| filtered_R | Compute and adjust p-values, with filtering |
| filterfun | Creates a first FALSE exiting function from the list of filter functions it is given. |
| filter_volcano | Volcano plot for overall variance filtering |
| findLargest | Find the Entrez Gene ID corresponding to the largest statistic |
| gapFilter | A filter to select genes based on there being a gap. |
| genefilter | A function to filter genes. |
| genefinder | Finds genes that have similar patterns of expression. |
| genefinder-method | Finds genes that have similar patterns of expression. |
| genescale | Scales a matrix or vector. |
| getFilterNames | A function to filter an eSet object |
| getFuncDesc | A function to filter an eSet object |
| getRdAsText | A function to filter an eSet object |
| half.range.mode | Mode estimation for continuous data |
| isESet | A function to filter an eSet object |
| kappa_p | Compute proportionality constant for fold change bound. |
| kappa_t | Compute proportionality constant for fold change bound. |
| kOverA | A filter function for k elements larger than A. |
| maxA | A filter function to filter according to the maximum. |
| nsFilter | Filtering of Features in an ExpressionSet |
| nsFilter-method | Filtering of Features in an ExpressionSet |
| parseArgs | A function to filter an eSet object |
| parseDesc | A function to filter an eSet object |
| pAUC | Class "rowROC" |
| pAUC-method | Class "rowROC" |
| plot-method | Class "rowROC" |
| pOverA | A filter function to filter according to the proportion of elements larger than A. |
| rejection_plot | Plot rejections vs. p-value cutoff |
| rowFtests | t-tests and F-tests for rows or columns of a matrix |
| rowFtests-method | t-tests and F-tests for rows or columns of a matrix |
| rowpAUCs | Rowwise ROC and pAUC computation |
| rowpAUCs-method | Rowwise ROC and pAUC computation |
| rowpAUCs-methods | Rowwise ROC and pAUC computation |
| rowROC | Class "rowROC" |
| rowROC-class | Class "rowROC" |
| rowSds | Row variance and standard deviation of a numeric array |
| rowttests | t-tests and F-tests for rows or columns of a matrix |
| rowttests-method | t-tests and F-tests for rows or columns of a matrix |
| rowVars | Row variance and standard deviation of a numeric array |
| sens | Class "rowROC" |
| sens-method | Class "rowROC" |
| setESetArgs | A function to filter an eSet object |
| shorth | A location estimator based on the shorth |
| show-method | Class "rowROC" |
| showESet | A function to filter an eSet object |
| spec | Class "rowROC" |
| spec-method | Class "rowROC" |
| tdata | A small test dataset of Affymetrix Expression data. |
| ttest | A filter function for a t.test |
| varFilter | Filtering of Features in an ExpressionSet |
| [-method | Class "rowROC" |