R: A convenience function to generate graphs based on the GO.db...

makeGOGraph {AnnotationDbi}

R Documentation

A convenience function to generate graphs based on the GO.db package

Description

makeGOGraph is a function to quickly convert any of the three Gene Ontologies in GO.db into a graphNEL object where each edge is given a weight of 1.

Usage

  makeGOGraph(ont = c("bp","mf","cc"))

Arguments

ont

Specifies the ontology: "cc", "bp" or "mf".

Author(s)

Marc Carlson

Examples

  ## makes a GO graph from the CC ontology 
  f <- makeGOGraph("cc")