HST 583 Fall 2004 Calendar
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Date
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Lecture Monday 3:00-4:00 and Wednesday 3:00-4:00 PM Room E25-119 (except as noted) |
Lab Monday 1:00-2:30 PM Room 1-115 (except as noted) |
Discussion Wednesday 2:00-3:00 PM Room E25-117 |
Overview | |||
9/8 Wed |
Introduction to course. Rick Hoge Introduction to Functional Magnetic Resonance Imaging. Rick Hoge | ||
Functional Neural Systems | |||
9/13 Mon |
Overview of Neural Systems. Neural Systems I. Brad Dickerson Hand out PS # 1. |
Introduction to lab, viewing MR images, and MatLab. Safety video. Rick Hoge |
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9/15 Wed |
Neural Systems II. Brad Dickerson |
Human subjects safety issues. Randy Gollub |
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9/20 Mon |
Class taught in Conference Room 2204 at
Bldg. 149, Charlestown Navy Yard Neural Systems III. Brad Dickerson |
MGH Martinos Center MRI Tour Rick Hoge |
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Imaging Physiology | |||
9/22 Wed |
Overview of Imaging Physiology
Applied respiratory and cardiovascular physiology I. Robert Banzett PS #1 due. |
See Bibliography. |
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9/27 Mon |
Applied respiratory and cardiovascular physiology II. Robert Banzett Assign PS # 2. |
1. Intro to fMRI data acquisition and viewing. Rick Hoge |
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9/29 Wed |
Cerebrovascular anatomy and neural regulation of CNS blood flow. Brad Dickerson |
Review of imaging physiology. The big picture of HST 583. Martin Zalesak |
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10/4 Mon |
Neurovascular coupling. Global vs. regionally specific changes in CBF and metabolism. Brad Dickerson |
2. Biophysical basis of fMRI signal. Intro and Lab. Rick Hoge |
Experiment Design |
10/6 Wed |
General Principles of Experimental Design, pt. 1. Robert Savoy PS#2 due. Assign PS#3. |
See Bibliograhy. |
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10/11 Mon |
Columbus Day - holiday. |
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10/13 Wed |
General Principles of Experimental Design, pt. 2. Robert Savoy Psychological state variables in imaging. Robert Savoy |
To be determined. | |
Physics of Image Acquisition | |||
10/18 Mon |
Overview of structural and functional MRI signal acquisition. Larry Wald PS #3 due. Assign PS #4. |
2. Biophysical basis of fMRI signals, part 2. Rick Hoge |
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10/20 Wed |
MRI Physics I. Jorge Jovicich |
Movement artifacts in fMRI. Rick Hoge |
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10/25 Mon |
MRI Physics II. Larry Wald |
3. Improving fMRI signal using physiological data. Jennifer Melcher & Irina Sigalovsky. Lab Report #1 due. |
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10/27 Wed |
MRI Physics III. Larry Wald |
To be determined. | |
11/1 Mon |
MRI Physics IV. Jorge Jovicich |
Extra lab session. Rick Hoge & Martin Zalesak Lab Report #2 due. |
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11/3 Wed |
Physics of diffusion weighted imaging. David Tuch |
To be determined. |
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11/8 Mon |
Diffusion weighted imaging II. David Tuch |
Diffusion gradients lab. David Tuch & Rick Hoge Lab Report #2 due. |
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11/10 Wed |
Mid-term Exam | ||
Statistical Analysis | |||
11/15 Mon |
Overview of fMRI statistical Analysis. Stats I. Doug Greve Handout PS #4. |
5. Statistical analysis of fMRI data, part 1. Savoy, Hoge, Greve & Vangel Lab Report #4 due. |
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11/17 Wed |
Stats II. Doug Greve |
To be determined. | |
11/22 Mon |
Stats III. Doug Greve |
5. Statistical analysis of fMRI data, part 2. Savoy, Hoge, Greve & Vangel |
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11/24 Wed |
Stats IV. Mark Vangel. Slides. Handout. | .
To be determined. | |
11/29 Mon |
Stats V. Mark Vangel PS #4 due. |
6. Morphometric analysis. David Kennedy & David Salat. Lab report #5 due. |
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12/1 Wed |
Stats VI. Mark Vangel |
Lab Report #6 due. | To be determined. |
Structural and functional analysis. | |||
12/6 Mon |
Spatial normalization for anatomical analysis. DTI applications. David Kennedy |
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12/8 Wed |
Surface-based anatomical analysis. David Salat |
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12/13 Mon |
Final Exam (9:00 AM-12:00 PM) E25-119 |