Manolis Kellis Publications - Chronological

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  1. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
  2. An endogenous small interfering RNA pathway in Drosophila.
  3. Conservation of small RNA pathways in platypus
  4. Genome analysis of the platypus reveals unique signatures of evolution

  5. Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes

  6. Evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network following duplication
  7. A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands
  8. Distinguishing protein-coding and noncoding genes in the human genome
  9. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
  10. Evolution of genes and genomes in the Drosophila Phylogeny
  11. Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes
  12. Reliable prediction of regulator targets using 12 Drosophila genomes
  13. Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
  14. Revisiting the protein-coding gene catalog of Drosophila melanogaster using twelve fly genomes
  15. Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo
  16. Distinguishing protein-coding and noncoding genes in the human genome
  17. Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
  18. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
  19. Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
  20. RNA Polymerase Stalling at Developmental Control Genes in the Drosophila Embryo
  21. Genome sequence, comparative analysis and haplotype structure of the domestic dog
  22. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
  23. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
  24. Sequencing and comparison of yeast species to identify genes and regulatory motifs
  25. Transcriptional regulatory code of a eukaryotic genome
  26. Genome duplication in the teleost fish Tetraodon nigrovidridis reveals the early vertebrate proto-karyotype
  27. Methods in comparative genomics: genome correspondence, gene identification, regulatory motif discovery
  28. Whole-genome comparative annotation and motif discovery in yeast
  29. Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts
  30. Gene finding using multiple related species: a classification approach.
  31. What's in the human genome? Large-scale discovery and validation of functional elements
  32. The changing face of genomics
  33. Computational Comparative Genomics: Genes, Regulation, Evolution
  34. Position specific variation in the rate of evolution in transcription factor binding sites
  35. The Genome Sequence of the filamentous fungus Neurospora crassa
  36. Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts
  37. Biological Signal Discovery: The Power of Multiple Genomes
  38. Crust: A new Voronoi-Based Surface Reconstruction Algorithm
  39. ECImorph: 2D polygon morphing using the Extended Gaussian Image
  40. 3Dmorph: polygon-based geometry morphing
  41. Imagina: Sketch-based Image Retrieval using Cognitive Abstraction
  42. Wavelet-based character recognition in curvature space
  43. Robologo: Interactive programming environment for wheeled robot
  44. Meta-evolution: Computational requirements for evolutionary bursts
  45. Mood: Auditory recognition and classification based on changes in attentional state
  46. Webbot: A constraint model for automated web traversal
  47. Invest: Three algorithms for predicting stock market changes
Manolis Kellis