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Imaging Library - Connectivity
Bhattacharya, S., Ho, M.R., and Purkayastha, S. (2006). A Bayesian approach to modeling dynamic effective connectivity with fMRI data. NeuroImage, 30, 794-812. [pdf]
Buchel, C. and Friston, K.J. (2000). Assessing interactions among neuronal systems using functional neuroimaging. Neural Networks, 13, 871-882. [pdf]
Buchel, C. and Friston, K.J. (1998). Dynamic Changes in Effective Connectivity Characterized by Variable Parameter Regression and Kalman Filtering. Human Brain Mapping, 6, 403-408. [pdf]
Buchel, C. and Friston, K.J. (1997). Characterizing functional integration. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, and J.C. Mazziotta, editors, Human Brain Function, pages 127-140. Academic Press USA.
Buchel, C. and Friston, K.J. (1997). Modulation of connectivity in visual pathways by attention: Cortical interactions evaluated with structural equation modelling and fMRI. Cerebral Cortex, 7, 768-778. [pdf]
Buchel, C., Coull, J.T., and Friston, K.J. (1999). The predictive value of changes in effective connectivity for human learning. Science, 1538-1541. [pdf]
David, O., Cosmelli, D., and Friston, K.J. (2004). Evaluation of different measures of functional connectivity using a neural mass model. NeuroImage, 21, 659-673. [pdf]
David, O., Kiebel, S.J., Harrison, L.M. Mattout, J., Kilner, J.M, and Friston, K.J. (2005). Dynamic causal modeling of evoked responses in EEG and MEG. NeuroImage 30, 1255-1272. [pdf]
Friston, K.J. (2003). Dynamic Causal Models. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition. [pdf]
Friston, K.J. (2003). Functional connectivity. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition. [pdf]
Friston, K.J. (2003). Functional integration. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition. [pdf]
Friston, K.J. (2003). Mathematical appendix. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition. [pdf]
Friston, K.J. (2003). Volterra kernels and connectivity. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition. [pdf]
Friston, K.J., Harrison, L., and Penny, W. (2003). Dynamic causal modelling. Neuroimage, 19, 1273 - 1302. [pdf]
Friston, K.J. (1998). Imaging Neuroscience: principles or maps?. Proc. Natl. Acad. Sci. USA, 95, 796-802. [pdf]
Friston, K.J. (1998). Modes or models: a critique on independent component analysis for fMRI. Trends in Cognitive Science, 2, 373-374. [pdf]
Friston, K.J. (1997). Another neural code? NeuroImage, 5, 213-220. [pdf]
Friston, K.J. (1997). Characterizing distributed functional systems. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, and J.C. Mazziotta, editors, Human Brain Function, pages 107-126. Academic Press USA.
Friston, K.J. (1995). Functional and effective connectivity in neuroimaging: A synthesis. Human Brain Mapping, 2, 56-78. [pdf]
Friston, K.J. and Buchel, C. (2000). Attentional modulation of effective connectivity from V2 to V5/MT in humans. Proc. Natl. Acad. Sci. USA, 97, 7591-7596. [pdf]
Friston, K.J., Buchel, C., Fink, G.R., Morris, J., Rolls, E., and Dolan, R. (1997). Psychophysiological and modulatory interactions in Neuroimaging. NeuroImage, 6, 218-229. [pdf]
Friston, K.J., Frith, C., Fletcher, P., Liddle, P.F., and Frackowiak, R.S.J. (1996). Functional topography: multidimensional scaling and functional connectivity in the brain. Cerebral Cortex, 6, 156-164. [pdf]
Friston, K.J., Frith, C., Frackowiak, R.S.J., and Turner, R. (1995). Characterizing Dynamic Brain Responses with fMRI: A multivariate Approach. NeuroImage, 2, 166-172. [pdf]
Friston, K.J., Harrison, L., and Penny, W.D. (2003). Dynamic Causal Modelling. NeuroImage, 19, 1273-1302. [pdf]
Friston, K.J., Mechelli, A., Turner, R., and Prince, C.J. (2000). Nonlinear responses in fMRI: the balloon model, volterra kernels, and other hemodynamics. NeuroImage, 12, 466-477. [pdf]
Friston, K.J., Phillips, J., Chawla, D., and Buchel, C. (2000). Nonlinear PCA: Characterizing interactions between modes of brain activity. Phil. Trans. R. Soc. London, B 355, 135-146. [pdf]
Friston, K.J., Phillips, J., Chawla, D., and Buchel, C. (1999). Revealing interactions among brain systems with nonlinear PCA. Human Brain Mapping, 8, 92-97. [pdf]
Friston, K.J., Stephan, K.M, and Frackowiak, R.S.J. (1997). Transient phase-locking and dynamic correlations: Are they the same thing?Human Brain Mapping, 5, 48-57. [pdf]
Friston, K.J., Stephan, K.M, Heather, J.D., Frith, C., Ioannides, A.A., Liu, L.C., Rugg, M.D., Vieth, J., Keber, H., Hunter, K., and Frackowiak, R.S.J. (1996). A Multivariate Analysis of Evoked Responses in EEG and MEG data. NeuroImage, 3, 167-174. [pdf]
Friston, K.J., Ungerleider, L.G., Jezzard, P., and Turner, R. (1995). Characterizing modulatory interactions between V1 and V2 in human cortex with fMRI. Human Brain Mapping, 2, 211-224. [pdf]
Gitelman, D.R., Penny, W.D., Ashburner, J., and Friston, K.J. (2003). Modeling regional and psychophysiologic interactions in fMRI: the importance of hemodynamic deconvolution. NeuroImage, 19, 200-207. [pdf]
Goebel, R., Roebroeck, A., Kim, D.-S., and Formisano, E. (2003). Investigating directed cortical interactions in time-resolved fMRI data using vector autoregressive modeling and Granger causality mapping. Magnetic Resonance Imaging, 21, 1251-1261. [pdf]
Greicius, M., Krasnow, B., Reiss, I., and Menon, V. (2003). Functional connectivity in the resting brain: A network analysis of the default mode hypothesis. PNAS, 100, 253-258. [pdf]
Harrison, L. and Friston, K.J. (2003). Effective connectivity. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition. [pdf]
Horwitz, B. (2003). The elusive concept of brain connectivity. NeuroImage, 19, 466-470. [pdf]
Horwitz, B., Friston, K.J., and Taylor, J.G. (2000). Neural Modeling and Functional Brain Imaging: An Overview. Neural Networks, 13, 829-846. [pdf]
Kondo, H., Morishita, M., Osaka, N., Osaka, M., Fukuyama, H., and Shibasaki, H. (2004). Functional roles of the cingulo-frontal network in performance on working memory. NeuroImage, 21, 2-14. [pdf]
Lee, L., Harrison, L.M., and Mechelli, A. (2003). A report of the functional connectivity workshop, Dusseldorf 2002. NeuroImage, 19, 457-465. [pdf]
Mechelli, A., Penny, W.D., Price, C.J., Gitelman, D.R., and Friston, K.J. (2002). Effective connectivity and intersubject variability: using a multisubject network to test differences and commonalities. NeuroImage, 17, 1459-1469. [pdf]
Mechelli, A., Prince, C.J., Noppeney, U., and Friston, K.J. (2003). A dynamic causal modeling study on category effects: bottom-up or top-down mediation? Journal of Cognitive Neuroscience, 15, 925-934. [pdf]
Penny, W.D., Stephan, K.E., Mechelli, A., and Friston, K.J. (2004). Modeling Functional Integration: A Comparison of Structural Equation and Dynamic Causal and Models. NeuroImage, 23, 264-274. [pdf]
Penny, W.D., Stephan, K.E., Mechelli, A., and Friston, K.J. (2004). Comparing Dynamic Causal Models. NeuroImage, 22, 1157-1172. [pdf]
Ramnani, N., Behrens, T.E.J., Penny, W.D., and Matthews, P.M. (2004). New approaches for exploring anatomic and functional connectivity in the human brain. Biological Psychiatry. [pdf]
Roebroeck, A., Formisano, E., and Goebel, R. (2005). Mapping directed influence over the brain using Granger causality and fMRI. NeuroImage, 25, 230-242. [pdf]
Stephan, K.E., Marrison, L.M., Kiebel, S.J., David, O., Penny, W.D., and Friston, K.J. (2007). Dynamic causal models of neural system dynamics: current state and future extensions. Journal of Bioscience, 32, 129 - 144. [pdf]
Stephan, K.E., Marshall, J.C., Penny, W.D., Friston, K.J., and Fink, G.R. (2007). Interhemispheric integration of visual processing during task-driven lateralization. Journal of Neuroscience, 27, 3512 - 3522. [pdf]
Stephan, K.E., Weiskopf, N., Drysdale, P.M., Robinson, P.A., and Frisont, K.J. (2007). Comparing Hemodynamic models with DCM. Neuroimage, 38, 387 - 401. [pdf]
Zhang, L., Samaras, D., Alia-Klein, N., Volkow, N., and Goldstein, R. Modeling neuronal interactivity using dynamic Bayesian networks. (2006). Advances in Neural Information Processing Systems 18. Eds. Y. Weiss and B. Scholkopf, and J. Platt. Cambridge, MA: MIT Press. [pdf]
Zheng, X. and Rajapakse, J.C. (in press). Learning functional structure from fMR images. NeuroImage. [pdf]