This is an index of all words occuring in page titles.

See also:

• TitleIndex -- a shorter index

• FindPage -- find content or explore the wiki

---

A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | V | W | Z
Include system pages

A

Account

• NewAccount

Advanced

• MIST/AdvancedUsage

Am

• WhatShellAmIRunning

And

• PALM/MasksAndVoxelwiseRegressors

Apply

• topup/ApplyTopupUsersGuide

Applytopup

• topup/ApplytopupFurtherInformation
• topup/ExampleTopupFollowedByApplytopup

• Atlases
• Atlases-Reference
• Atlases/Juelich
• Atlases/striatumconn
• Atlases/striatumstruc
• CategoryAtlases

• Atlasquery

Auto

• AutoPtx

B

B58

• FMRIB58_FA

Bet

• Bet/Contents
• Bet/StepByStep

Blocks

• PALM/ExchangeabilityBlocks

Bri

• FslView/BriCon

By

• Bet/StepByStep
• DualRegression/StepByStep
• FDT/StepByStep
• FEAT/StepByStep1
• FIRST/StepByStep
• FLIRT/StepByStep
• Fast/StepByStep
• FslVBM/StepByStep
• GLM/CreatingDesignMatricesByHand
• StepByStep
• Tbss/StepByStep
• topup/ExampleTopupFollowedByApplytopup

C

Category

• CategoryAtlases
• CategoryBASIL
• CategoryBET
• CategoryDiffusion
• CategoryFABBER
• CategoryFDT
• CategoryFEAT
• CategoryFIRST
• CategoryFLIRT
• CategoryFNIRT
• CategoryFSLVBM
• CategoryFUGUE
• CategoryFaq
• CategoryFast
• CategoryFdr
• CategoryFlobs
• CategoryFslutils
• CategoryFunctional
• CategoryMCFLIRT
• CategoryMELODIC
• CategoryMiscvis
• CategoryMm
• CategoryOther
• CategoryPOSSUM
• CategoryPerfusion
• CategoryRandomise
• CategorySIENA
• CategorySUSAN
• CategoryStructural
• CategoryTBSS
• HelpOnFslDocumentation/CategoryPerfusion
• HelpOnFslDocumentation/CategoryScripting

Caveats

• PPICaveats

Check

• FslInstallation/CheckInstallation

• Cluster

Code

• FslInstallation/SourceCode
• FslInstallation/SourceCode/FslView

Con

• FslView/BriCon

Configure

• FslInstallation/FslInstaller/ShellConfigure

Contents

• BASIL/Contents
• BIANCA/Contents
• Bet/Contents
• DualRegression/Contents
• FABBER/Contents
• FAST/Contents
• FDT/Contents
• FEAT/Contents
• FEEDS/Contents
• FIRST/Contents
• FIX/Contents
• FLIRT/Contents
• FNIRT/Contents
• FSLNets/Contents
• FSLVBM/Contents
• FUGUE/Contents
• FslInstallation/Contents
• FslView/Contents
• Fslutils/Contents
• GLM/Contents
• MELODIC/Contents
• MISCVIS/Contents
• MIST/Contents
• MSM/Contents
• Nets/Contents
• PALM/Contents
• PNM/Contents
• POSSUM/Contents
• Randomise/Contents
• SIENA/Contents
• TBSS/Contents
• asl_file/Contents
• baycest/Contents
• eddy/Contents
• oxford_asl/Contents
• topup/Contents
• verbena/Contents

• Contributors

Course

• FSLCourseRoomSharing
• FslCourse
• FslCourseGroup

Creating

• GLM/CreatingDesignMatricesByHand

D

Data

• FEEDS/UsingData

Design

• GLM/CreatingDesignMatricesByHand

Diffusion

• CategoryDiffusion

Documentation

• HelpOnFslDocumentation
• HelpOnFslDocumentation/CategoryPerfusion
• HelpOnFslDocumentation/CategoryScripting

Downloading

• FEEDS/Downloading

Dual

• DualRegression
• DualRegression/Contents
• DualRegression/Faq
• DualRegression/StepByStep
• DualRegression/UserGuide

E

Editor

• EditorGroup

Editors

• TextEditors

Environment

• FslEnvironmentVariables

Example

• topup/ExampleTopupFollowedByApplytopup

Examples

• PALM/Examples

Exchangeability

• PALM/ExchangeabilityBlocks

Explained

• Orientation Explained

F

Faq

• CategoryFaq
• DualRegression/Faq
• FslInstallation/Faq
• FslView/Faq
• GLM/Faq
• Randomise/Faq
• TBSS/Faq
• eddy/Faq
• topup/Faq

Fast

• CategoryFast
• Fast/StepByStep

Faster

• PALM/FasterInference

Fdr

• CategoryFdr

Flobs

• CategoryFlobs

Followed

• topup/ExampleTopupFollowedByApplytopup

For

• FslHelpForUsers

• Formats

Free

• FreeSurfer

Fsl

• FslCourse
• FslCourseGroup
• FslEnvironmentVariables
• FslHelp
• FslHelpForUsers
• FslInstallation
• FslInstallation/CheckInstallation
• FslInstallation/Contents
• FslInstallation/Faq
• FslInstallation/FslInstaller
• FslInstallation/FslInstaller/ShellConfigure
• FslInstallation/Linux
• FslInstallation/MacOsX
• FslInstallation/Patches
• FslInstallation/ShellSetup
• FslInstallation/SourceCode
• FslInstallation/SourceCode/FslView
• FslInstallation/Windows
• FslOverview
• FslSge
• FslTools
• FslVBM/StepByStep
• FslView
• FslView/BriCon
• FslView/Contents
• FslView/Faq
• FslView/LayerInfo
• FslView/UserGuide
• HelpOnFslDocumentation
• HelpOnFslDocumentation/CategoryPerfusion
• HelpOnFslDocumentation/CategoryScripting

Fsladmin

• FsladminGroup

• CategoryFslutils
• Fslutils
• Fslutils/Contents
• Fslutils/FAQ

Functional

• CategoryFunctional

Further

• BASIL/FurtherInformation
• FIX/FurtherInformation
• FSLNets/FurtherInformation
• FurtherInformation
• Nets/FurtherInformation
• TBSS/FurtherInformation
• topup/ApplytopupFurtherInformation
• topup/TopupFurtherInformation

G

• Glossary

Group

• EditorGroup
• FLOBSGroup
• FslCourseGroup
• FsladminGroup

Guide

• BASIL/UserGuide
• BET/UserGuide
• DualRegression/UserGuide
• FABBER/UserGuide
• FDT/UserGuide
• FEAT/GuideStats
• FEAT/UserGuide
• FIRST/UserGuide
• FIX/UserGuide
• FLIRT/UserGuide
• FNIRT/UserGuide
• FSLVBM/UserGuide
• FUGUE/Guide
• FslView/UserGuide
• MIST/UserGuide
• MSM/UserGuide
• PALM/UserGuide
• PNM/UserGuide
• POSSUM/UserGuide
• Randomise/UserGuide
• Randomise/UserGuide/GLM_pairedT_example
• SIENA/UserGuide
• TBSS/UserGuide
• UsersGuide
• asl_file/UserGuide
• baycest/UserGuide
• eddy/UsersGuide
• oxford_asl/UserGuide
• topup/ApplyTopupUsersGuide
• topup/TopupUsersGuide
• topup/UserGuide
• verbena/UserGuide

H

Hand

• GLM/CreatingDesignMatricesByHand

Help

• FslHelp
• FslHelpForUsers
• HelpOnFslDocumentation
• HelpOnFslDocumentation/CategoryPerfusion
• HelpOnFslDocumentation/CategoryScripting

How

• PPIHowToRun

I

Inference

• PALM/FasterInference
• PALM/JointInference

Info

• FslView/LayerInfo

Information

• BASIL/FurtherInformation
• FIX/FurtherInformation
• FSLNets/FurtherInformation
• FurtherInformation
• Nets/FurtherInformation
• TBSS/FurtherInformation
• topup/ApplytopupFurtherInformation
• topup/TopupFurtherInformation

Initial

• InitialProcessing

Installation

• FslInstallation
• FslInstallation/CheckInstallation
• FslInstallation/Contents
• FslInstallation/Faq
• FslInstallation/FslInstaller
• FslInstallation/FslInstaller/ShellConfigure
• FslInstallation/Linux
• FslInstallation/MacOsX
• FslInstallation/Patches
• FslInstallation/ShellSetup
• FslInstallation/SourceCode
• FslInstallation/SourceCode/FslView
• FslInstallation/Windows

Installer

• FslInstallation/FslInstaller
• FslInstallation/FslInstaller/ShellConfigure

J

Job

• SyncJobTemplate2

Joint

• PALM/JointInference

Juelich

• Atlases/Juelich

L

Layer

• FslView/LayerInfo

Leyes

• FSLeyes

• Licence

Linux

• FslInstallation/Linux

M

Mac

• FslInstallation/MacOsX

Masks

• PALM/MasksAndVoxelwiseRegressors

Matrices

• GLM/CreatingDesignMatricesByHand

• Melview

• CategoryMiscvis
• Miscvis

• CategoryMm
• Mm

Motion

• FSLMotionOutliers

N

Nets

• FSLNets
• FSLNets/Contents
• FSLNets/FurtherInformation
• Nets
• Nets/Contents
• Nets/FurtherInformation

New

• NewAccount
• WhatsNew

O

On

• HelpOnFslDocumentation
• HelpOnFslDocumentation/CategoryPerfusion
• HelpOnFslDocumentation/CategoryScripting

Orientation

• Orientation Explained

Os

• FslInstallation/MacOsX

Other

• CategoryOther
• OtherSoftware

Outliers

• FSLMotionOutliers

Overview

• FslOverview

P

Page

• TestPage

Patches

• FslInstallation/Patches

Perfusion

• CategoryPerfusion
• HelpOnFslDocumentation/CategoryPerfusion

Pipeline

• FDT/Pipeline
• msm/SuggestedPipeline

• Plugins

Processing

• InitialProcessing

Ptx

• AutoPtx

R

• CategoryRandomise
• Randomise
• Randomise/Contents
• Randomise/Faq
• Randomise/Theory
• Randomise/UserGuide
• Randomise/UserGuide/GLM_pairedT_example

Reference

• Atlases-Reference

Regression

• DualRegression
• DualRegression/Contents
• DualRegression/Faq
• DualRegression/StepByStep
• DualRegression/UserGuide

Regressors

• PALM/MasksAndVoxelwiseRegressors

Results

• FEEDS/TimingResults

Room

• FSLCourseRoomSharing

Run

• PPIHowToRun

Running

• FEEDS/Running
• WhatShellAmIRunning

S

Schedule

• FLIRT/Schedule.html

Scripting

• HelpOnFslDocumentation/CategoryScripting

Setup

• FslInstallation/ShellSetup

Sge

• FslSge

Sharing

• FSLCourseRoomSharing

Shell

• FslInstallation/FslInstaller/ShellConfigure
• FslInstallation/ShellSetup
• WhatShellAmIRunning

Software

• OtherSoftware

Source

• FslInstallation/SourceCode
• FslInstallation/SourceCode/FslView

Stats

• FEAT/GuideStats

Step

• Bet/StepByStep
• DualRegression/StepByStep
• FDT/StepByStep
• FEAT/StepByStep1
• FIRST/StepByStep
• FLIRT/StepByStep
• Fast/StepByStep
• FslVBM/StepByStep
• StepByStep
• Tbss/StepByStep

Step1

• FEAT/StepByStep1

Structural

• CategoryStructural

Suggested

• msm/SuggestedPipeline

• Support

Surfer

• FreeSurfer

Sync

• SyncJobTemplate2

T

Tbss

• Tbss/StepByStep

Template2

• SyncJobTemplate2

Test

• TestPage

Text

• TextEditors

Theory

• Randomise/Theory
• verbena/Theory

Timing

• FEEDS/TimingResults

To

• PPIHowToRun

• FslTools
• Tools

Topup

• topup/ApplyTopupUsersGuide
• topup/ExampleTopupFollowedByApplytopup
• topup/TopupFurtherInformation
• topup/TopupUsersGuide

Tutorial

• BASIL/Tutorial
• asl_file/Tutorial

U

Usage

• MIST/AdvancedUsage

User

• BASIL/UserGuide
• BET/UserGuide
• DualRegression/UserGuide
• FABBER/UserGuide
• FDT/UserGuide
• FEAT/UserGuide
• FIRST/UserGuide
• FIX/UserGuide
• FLIRT/UserGuide
• FNIRT/UserGuide
• FSLVBM/UserGuide
• FslView/UserGuide
• MIST/UserGuide
• MSM/UserGuide
• PALM/UserGuide
• PNM/UserGuide
• POSSUM/UserGuide
• Randomise/UserGuide
• Randomise/UserGuide/GLM_pairedT_example
• SIENA/UserGuide
• TBSS/UserGuide
• asl_file/UserGuide
• baycest/UserGuide
• oxford_asl/UserGuide
• topup/UserGuide
• verbena/UserGuide

Userguide

• BIANCA/Userguide

Users

• FslHelpForUsers
• UsersGuide
• eddy/UsersGuide
• topup/ApplyTopupUsersGuide
• topup/TopupUsersGuide

Using

• FEEDS/UsingData

V

Variables

• FslEnvironmentVariables

View

• FslInstallation/SourceCode/FslView
• FslView
• FslView/BriCon
• FslView/Contents
• FslView/Faq
• FslView/LayerInfo
• FslView/UserGuide

Voxelwise

• PALM/MasksAndVoxelwiseRegressors

W

What

• WhatShellAmIRunning

Whats

• WhatsNew

Windows

• FslInstallation/Windows

Z

Zeroing

• PPIZeroing