inline_stoch_group_meson_w.cc

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/*! \file
 * \brief Inline measurement of stochastic group meson operator
 *
 */
 
#include "handle.h"
#include "meas/inline/hadron/inline_stoch_group_meson_w.h"
#include "meas/inline/abs_inline_measurement_factory.h"
#include "meas/smear/quark_smearing_factory.h"
#include "meas/smear/quark_smearing_aggregate.h"
#include "meas/sources/source_smearing_aggregate.h"
#include "meas/sources/source_smearing_factory.h"
#include "meas/sinks/sink_smearing_aggregate.h"
#include "meas/sinks/sink_smearing_factory.h"
#include "meas/hadron/dilution_scheme_aggregate.h"
#include "meas/hadron/dilution_scheme_factory.h"
#include "meas/glue/mesplq.h"
#include "meas/smear/displacement.h"
#include "util/ferm/diractodr.h"
#include "util/ft/sftmom.h"
#include "util/info/proginfo.h"
#include "meas/inline/make_xml_file.h"
#include <sstream> 
 
#include "meas/inline/io/named_objmap.h"
 
namespace Chroma 
{ 
  /*!
   * \ingroup hadron
   *
   * @{
   */
  namespace InlineStochGroupMesonEnv 
  { 
    //! Number of quarks to be used in this construction
    const int N_quarks = 2;
        
        
    //
    // The spin basis matrix to goto Dirac
    //
    SpinMatrix rotate_mat(adj(DiracToDRMat()));
 
    // Reader for input parameters
    void read(XMLReader& xml, const std::string& path, InlineStochGroupMesonEnv::Params::Param_t& param)
    {
      XMLReader paramtop(xml, path);
 
      int version;
      read(paramtop, "version", version);
 
      switch (version) 
      {
      case 1:
        /**************************************************************************/
        break;
 
      default :
        /**************************************************************************/
 
        QDPIO::cerr << "Input parameter version " << version << " unsupported." << std::endl;
        QDP_abort(1);
      }
 
      read(paramtop, "creationOpContractType", param.creat_op_contract_type);
      read(paramtop, "annihilationOpContractType", param.annih_op_contract_type);
      read(paramtop, "mom2_max", param.mom2_max);
      read(paramtop, "displacement_length", param.displacement_length);
 
      param.quark_smearing = readXMLGroup(paramtop, "QuarkSmearing", "wvf_kind");
      param.link_smearing  = readXMLGroup(paramtop, "LinkSmearing", "LinkSmearingType");
      param.quark_dils     = readXMLArrayGroup(paramtop, "QuarkDilutions", "DilutionType");
    }
 
 
    // Writer for input parameters
    void write(XMLWriter& xml, const std::string& path, const InlineStochGroupMesonEnv::Params::Param_t& param)
    {
      push(xml, path);
 
      int version = 1;
 
      write(xml, "version", version);
      write(xml, "creationOpContractType", param.creat_op_contract_type);
      write(xml, "annihilationOpContractType", param.annih_op_contract_type);
      write(xml, "mom2_max", param.mom2_max);
      write(xml, "displacement_length", param.displacement_length);
      xml << param.quark_smearing.xml;
      xml << param.link_smearing.xml;
 
      push(xml, "QuarkDilutions");
 
      for(int i=0; i < param.quark_dils.size(); ++i)
        xml << param.quark_dils[i].xml;
 
      pop(xml);
 
      pop(xml);
    }
 
 
    //Reader for 2-quark operator file
    void read(XMLReader& xml, const std::string& path, InlineStochGroupMesonEnv::Params::NamedObject_t::TwoQuarkOpsFile_t& input)
    {
      XMLReader inputtop(xml, path);
 
      read(inputtop, "ops_file", input.ops_file);
      read(inputtop, "id", input.id);
    }
 
 
    // Writer for 2-quark operator file
    void write(XMLWriter& xml, const std::string& path, const InlineStochGroupMesonEnv::Params::NamedObject_t::TwoQuarkOpsFile_t& input)
    {
      push(xml, path);
      write(xml, "ops_file", input.ops_file);
      write(xml, "id", input.id);
      pop(xml);
    }
 
 
    //! Read named objects 
    void read(XMLReader& xml, const std::string& path, InlineStochGroupMesonEnv::Params::NamedObject_t& input)
    {
      XMLReader inputtop(xml, path);
 
      read(inputtop, "gauge_id", input.gauge_id);
      read(inputtop, "operators_file", input.operators_file);
      read(inputtop, "Quark_ids", input.quark_ids);
    }
 
    //! Write named objects
    void write(XMLWriter& xml, const std::string& path, const InlineStochGroupMesonEnv::Params::NamedObject_t& input)
    {
      push(xml, path);
 
      write(xml, "gauge_id", input.gauge_id);
      write(xml, "operators_file", input.operators_file);
      write(xml, "Quark_ids", input.quark_ids);
 
      pop(xml);
    }
  }
 
 
  namespace InlineStochGroupMesonEnv 
  { 
    // Anonymous namespace for registration
    namespace
    {
      AbsInlineMeasurement* createMeasurement(XMLReader& xml_in, 
                                              const std::string& path) 
      {
        return new InlineMeas(Params(xml_in, path));
      }
 
      //! Local registration flag
      bool registered = false;
    }
 
    const std::string name = "STOCH_GROUP_MESON";
 
    //! Register all the factories
    bool registerAll() 
    {
      bool success = true; 
      if (! registered)
      {
        success &= QuarkSourceSmearingEnv::registerAll();
        success &= QuarkSinkSmearingEnv::registerAll();
        success &= DilutionSchemeEnv::registerAll();
        success &= TheInlineMeasurementFactory::Instance().registerObject(name, createMeasurement);
        registered = true;
      }
      return success;
    }
 
 
    //! Anonymous namespace
    /*! Diagnostic stuff */
    namespace
    {
      StandardOutputStream& operator<<(StandardOutputStream& os, const multi1d<int>& d)
      {
        if (d.size() > 0)
        {
          os << d[0];
 
          for(int i=1; i < d.size(); ++i)
            os << " " << d[i];
        }
 
        return os;
      }
    }
 
 
    //----------------------------------------------------------------------------
    // Param stuff
    Params::Params()
    { 
      frequency = 0; 
      param.mom2_max = 0;
    }
 
    Params::Params(XMLReader& xml_in, const std::string& path) 
    {
      try 
      {
        XMLReader paramtop(xml_in, path);
 
        if (paramtop.count("Frequency") == 1)
          read(paramtop, "Frequency", frequency);
        else
          frequency = 1;
 
        // Read program parameters
        read(paramtop, "Param", param);
 
        // Read in the output propagator/source configuration info
        read(paramtop, "NamedObject", named_obj);
 
        // Possible alternate XML file pattern
        if (paramtop.count("xml_file") != 0) 
        {
          read(paramtop, "xml_file", xml_file);
        }
      }
      catch(const std::string& e) 
      {
        QDPIO::cerr << __func__ << ": Caught Exception reading XML: " << e << std::endl;
        QDP_abort(1);
      }
    }
 
 
    void
    Params::writeXML(XMLWriter& xml_out, const std::string& path) 
    {
      push(xml_out, path);
    
      // Parameters for source construction
      write(xml_out, "Param", param);
 
      // Write out the output propagator/source configuration info
      write(xml_out, "NamedObject", named_obj);
 
      pop(xml_out);
    }
 
 
 
    //--------------------------------------------------------------
    //! 2-quark operator structure
    struct TwoQuarkOps_t
    {
      struct TwoQuarkOp_t
      {
        struct QuarkInfo_t
        {
          multi1d<int>  displacement;   /*!< Orig plus/minus 1-based directional displacements */
          int           spin;           /*!< 1-based spin index */
        };
 
        multi1d<QuarkInfo_t>  quark;    /*!< Displacement and spin for each quark */
        std::string name;               /*!< Name of the 2-quark operator */
      };
        
      multi1d<TwoQuarkOp_t> ops; /*!< 2-quark ops within a file */
    };
 
    //! Write quark 
    void write(XMLWriter& xml, const std::string& path, 
               const TwoQuarkOps_t::TwoQuarkOp_t::QuarkInfo_t& input)
    {
      push(xml, path);
 
      write(xml, "Displacement", input.displacement);
      write(xml, "Spin", input.spin);
 
      pop(xml);
    }
 
    //! Write two quark op 
    void write(XMLWriter& xml, const std::string& path, 
               const TwoQuarkOps_t::TwoQuarkOp_t& input)
    {
      push(xml, path);
 
      write(xml, "Quarks", input.quark);
      write(xml, "Name", input.name);
 
      pop(xml);
    }
        
 
 
    //---------------------------------------------------------------------------
 
 
    //! The key for smeared quarks 
    struct KeySmearedQuark_t
    {
      int  t0;              /*!< Time of source */
      int dil;              /*!< dilution component per timeslice */
    };
 
 
    //! Support for the keys of smeared quarks 
    bool operator<(const KeySmearedQuark_t& a, const KeySmearedQuark_t& b)
    {
      multi1d<int> lga(2);
      lga[0] = a.t0;
      lga[1] = a.dil;
 
      multi1d<int> lgb(2);
      lgb[0] = b.t0;
      lgb[1] = b.dil;
 
      return (lga < lgb);
    }
 
 
    struct SmearedQuark_t
    {
      LatticeFermion quark;
    };
 
    //----------------------------------------------------------------------------
    //! The key for smeared and displaced color vectors
    struct KeySmearedDispColorVector_t
    {
      int  t0;              /*!< Time of source */
      int  dil;             /*!< dilution component per timeslice */
 
      multi1d<int>  displacement;    /*!< Orig plus/minus 1-based directional displacements */
      int           spin;            /*!< 1-based spin index */
    };
 
 
    //! Support for the keys of smeared and displaced color vectors
    bool operator<(const KeySmearedDispColorVector_t& a, const KeySmearedDispColorVector_t& b)
    {
      multi1d<int> lgaa(3);
      lgaa[0] = a.spin;
      lgaa[1] = a.t0;
      lgaa[2] = a.dil;
      multi1d<int> lga = concat(lgaa, a.displacement);
 
      multi1d<int> lgbb(3);
      lgbb[0] = b.spin;
      lgbb[1] = b.t0;
      lgbb[2] = b.dil;
      multi1d<int> lgb = concat(lgbb, b.displacement);
 
      return (lga < lgb);
    }
 
 
    //! The value of the std::map
    struct SmearedDispColorVector_t
    {
      multi1d<LatticeComplex> vec;
    };
 
 
    //----------------------------------------------------------------------------
    //! The smeared and displaced objects
    class SmearedDispObjects
    {
    public:
      //! Constructor from smeared std::map 
      SmearedDispObjects(int disp_length,
                         multi1d< Handle< DilutionScheme<LatticeFermion> > > dil_quarks,        
                         Handle< QuarkSmearing<LatticeFermion> > qsmr,
                         const multi1d<LatticeColorMatrix> & u_smr);
 
      //! Destructor
      ~SmearedDispObjects() {}
 
      //! Accessor
      virtual multi1d<LatticeComplex> getDispSource(int quark_num, 
                                                    const KeySmearedDispColorVector_t& key);
 
      //! Accessor
      virtual multi1d<LatticeComplex> getDispSolution(int quark_num,
                                                      const KeySmearedDispColorVector_t& key);
 
    protected:
      //! Displace an object
      virtual const multi1d<LatticeComplex>&  displaceObject(
        std::map<KeySmearedDispColorVector_t, SmearedDispColorVector_t>& disp_quark_map,
        const KeySmearedDispColorVector_t& key,
        const LatticeFermion& smrd_q);
                        
      //! Smear sources and solutions
      virtual const LatticeFermion&
      smearSource(int qnum , const KeySmearedQuark_t & key);
                                         
      virtual const LatticeFermion&
      smearSolution(int qnum , const KeySmearedQuark_t & key);
 
    private:
      multi1d< Handle< DilutionScheme<LatticeFermion> > > diluted_quarks;       
      Handle < QuarkSmearing<LatticeFermion> > quarkSmearing;
                
      //!Gauge field 
      const multi1d<LatticeColorMatrix> & u;
                        
      //! Displacement length
      int displacement_length;
 
                        
      //! Maps of smeared color vectors 
      multi1d< std::map<KeySmearedQuark_t, SmearedQuark_t> > smeared_src_maps;
      multi1d< std::map<KeySmearedQuark_t, SmearedQuark_t> > smeared_soln_maps;
 
      
      //!Maps of smeared displaced color vectors 
      multi1d< std::map<KeySmearedDispColorVector_t, SmearedDispColorVector_t> > disp_src_maps;
      multi1d< std::map<KeySmearedDispColorVector_t, SmearedDispColorVector_t> > disp_soln_maps;
    };
 
        
    // Constructor from smeared std::map 
    SmearedDispObjects::SmearedDispObjects(int disp_length,
                                           multi1d< Handle< DilutionScheme<LatticeFermion> > > dil_quarks,
                                           Handle< QuarkSmearing<LatticeFermion> > qsmr,
                                           const multi1d<LatticeColorMatrix> & u_smr) :
      displacement_length(disp_length),diluted_quarks(dil_quarks),
      quarkSmearing(qsmr), u(u_smr)
    {
      if (diluted_quarks.size() != N_quarks)
      {
        QDPIO::cerr << __func__ << ": expected num_quarks=" << N_quarks << std::endl;
        QDP_abort(1);
      }
 
      smeared_src_maps.resize(N_quarks);
      smeared_soln_maps.resize(N_quarks);
                        
      disp_src_maps.resize(N_quarks);
      disp_soln_maps.resize(N_quarks);
    }
 
 
    const LatticeFermion&
    SmearedDispObjects::smearSource(int qnum, 
                                    const KeySmearedQuark_t & key)
    {
      std::map<KeySmearedQuark_t, SmearedQuark_t> & qmap = smeared_src_maps[qnum];
 
      //If entry is not in std::map create it
      if ( qmap.find(key) == qmap.end() )
      {
        // Insert an empty entry and then modify it. This saves on
        // copying the data around
        {
          SmearedQuark_t smrd_empty;
          qmap.insert(std::make_pair(key, smrd_empty));
 
          // Sanity check - the entry better be there
          if ( qmap.find(key) == qmap.end() )
          {
            QDPIO::cerr << __func__ 
                        << ": internal error - could not insert empty key in std::map"
                        << std::endl;
            QDP_abort(1);
          }                   
        }
 
        // Modify the previous empty entry
        SmearedQuark_t& smrd_q = qmap.find(key)->second;
             
        StopWatch snoop;
 
        snoop.reset();
        snoop.start();
        
        LatticeFermion f = diluted_quarks[qnum]->dilutedSource(key.t0, key.dil);
 
        (*quarkSmearing)(f, u);
 
        // The first set of quarks will get a gamma_5 to implement the oper we need
        // op=  eta_1^dag * [whatever gamma and U oper structure] * gamma_5 eta_0^dag
        SpinMatrix mat;
        if (qnum == 0)
        {
          mat = rotate_mat * Gamma(15);
        }
        else
        {
          mat = rotate_mat;
        }
                                
        smrd_q.quark = mat * f;
 
        snoop.stop();
 
        QDPIO::cout << " Smeared Sources: Quark = "<< qnum <<" t0 = "
                    << key.t0 <<" dil = "<< key.dil << " Time = "<< snoop.getTimeInSeconds() <<" sec"<<std::endl;
 
        // Insert
        qmap.insert(std::make_pair(key, smrd_q));
      
      } // if find in std::map
 
      // The key now must exist in the std::map, so return the smeared quark field
 
      return (qmap.find(key)->second).quark ;
    }
 
        
                
    const LatticeFermion&
    SmearedDispObjects::smearSolution(int qnum , 
                                      const KeySmearedQuark_t & key)
    {
      std::map<KeySmearedQuark_t, SmearedQuark_t> & qmap = smeared_soln_maps[qnum];
 
      //If entry is not in std::map create it
      if ( qmap.find(key) == qmap.end() )
      {
 
        // Insert an empty entry and then modify it. This saves on
        // copying the data around
        {
          SmearedQuark_t smrd_empty;
          qmap.insert(std::make_pair(key, smrd_empty));
 
          // Sanity check - the entry better be there
          if ( qmap.find(key) == qmap.end() )
          {
            QDPIO::cerr << __func__ 
                        << ": internal error - could not insert empty key in std::map"
                        << std::endl;
            QDP_abort(1);
          }                   
        }
 
        // Modify the previous empty entry
        SmearedQuark_t& smrd_q = qmap.find(key)->second;
             
        StopWatch snoop;
        snoop.reset();
        snoop.start();
        
        LatticeFermion f = diluted_quarks[qnum]->dilutedSolution(key.t0, key.dil);
 
        (*quarkSmearing)(smrd_q.quark, u);
 
        // The first set of quarks will get a gamma_5 to implement the oper. we need
        // op=  psi_0^dag * gamma_5 * [whatever gamma and U oper structure] * psi_1^dag
        SpinMatrix mat;
        if (qnum == 0)
        {
          mat = rotate_mat * Gamma(15);
        }
        else
        {
          mat = rotate_mat;
        }
                                
        smrd_q.quark = mat * f;
              
        snoop.stop();
 
        QDPIO::cout << " Smeared Sinks: Quark = "<< qnum <<" t0 = "
                    << key.t0 <<" dil = "<< key.dil << " Time = "<< snoop.getTimeInSeconds() <<" sec"<<std::endl;
        
        // Insert
        qmap.insert(std::make_pair(key, smrd_q));
      
      } // if find in std::map
 
      // The key now must exist in the std::map, so return the smeared quark field
 
      return (qmap.find(key)->second).quark ;
    }
 
    //! Accessor
    multi1d<LatticeComplex>
    SmearedDispObjects::getDispSource(int quark_num, 
                                      const KeySmearedDispColorVector_t& key)
    {
      //Get Smeared quark 
      KeySmearedQuark_t smr_key;
      smr_key.t0 = key.t0;
      smr_key.dil = key.dil;
 
      const LatticeFermion& smrd_q = smearSource(quark_num, smr_key);
                                        
      multi1d<LatticeComplex> vec;
 
      //Check if any displacement is needed
      if (displacement_length == 0) 
      {
        vec.resize(Nc);
        LatticeColorVector colvec = peekSpin( smrd_q, key.spin - 1);
 
        for (int c = 0 ; c < Nc ; ++c)
          vec[c] = peekColor( colvec, c);
 
      }
      else
      {
        vec = displaceObject( disp_src_maps[quark_num] , key , smrd_q);
      }
 
      return vec;
    }
 
    //! Accessor
    multi1d<LatticeComplex>
    SmearedDispObjects::getDispSolution(int quark_num, 
                                        const KeySmearedDispColorVector_t& key)
    {
      //Get Smeared quark 
      KeySmearedQuark_t smr_key;
      smr_key.t0 = key.t0;
      smr_key.dil = key.dil;
 
      const LatticeFermion& smrd_q = smearSolution(quark_num, smr_key);
                                
      multi1d<LatticeComplex> vec;
 
      //Check if any displacement is needed
      if (displacement_length == 0) 
      {
        vec.resize(Nc);
        LatticeColorVector colvec = peekSpin( smrd_q, key.spin - 1);
 
        for (int c = 0 ; c < Nc ; ++c)
          vec[c] = peekColor( colvec, c);
 
      }
      else
      {
        vec = displaceObject( disp_soln_maps[quark_num] , key , smrd_q);
      }
 
      return vec;
    }
 
 
    //! Accessor
    const multi1d<LatticeComplex> &
    SmearedDispObjects::displaceObject(
      std::map<KeySmearedDispColorVector_t, SmearedDispColorVector_t>& disp_quark_map,
      const KeySmearedDispColorVector_t& key,
      const LatticeFermion& smrd_q)
    {
      StopWatch snoop;
 
      // If no entry, then create a displaced version of the quark
      if (disp_quark_map.find(key) == disp_quark_map.end())
      {
        //            std::cout << __func__ 
        //                 << ": n=" << n
        //                 << " l=" << l
        //                 << " i=" << i 
        //                 << " disp=" << term.quark[i].displacement
        //                 << " len=" << term.quark[i].disp_len
        //                 << " dir=" << term.quark[i].disp_dir
        //                 << std::endl;
 
        // Insert an empty entry and then modify it. This saves on
        // copying the data around
        {
          SmearedDispColorVector_t disp_empty;
 
          snoop.reset();
          snoop.start();
 
          disp_quark_map.insert(std::make_pair(key, disp_empty));
 
          snoop.stop();
 
          QDPIO::cout<<"Inserted key in std::map: time = "<< snoop.getTimeInSeconds() << "secs"<<std::endl;
 
          // Sanity check - the entry better be there
          if (disp_quark_map.find(key) == disp_quark_map.end())
          {
            QDPIO::cerr << __func__ 
                        << ": internal error - could not insert empty key in std::map"
                        << std::endl;
            QDP_abort(1);
          }                   
        }
 
        // Modify the previous empty entry
        SmearedDispColorVector_t& disp_q = disp_quark_map.find(key)->second;
 
        snoop.reset();
        snoop.start();
 
        //Chroma uses a zero-based spin convention
        LatticeColorVector vec = peekSpin(smrd_q,  key.spin - 1);
 
        for(int i=0; i < key.displacement.size(); ++i)
        {
          if (key.displacement[i] > 0)
          {
            int disp_dir = key.displacement[i] - 1;
            int disp_len = displacement_length;
            displacement(u, vec, disp_len, disp_dir);
          }
          else if (key.displacement[i] < 0)
          {
            int disp_dir = -key.displacement[i] - 1;
            int disp_len = -displacement_length;
            displacement(u, vec, disp_len, disp_dir);
          }
        }
 
        snoop.stop();
 
        QDPIO::cout << "Displaced Quarks: Spin = "<<key.spin<<" Disp = "
                    << key.displacement <<" Time = "<<snoop.getTimeInSeconds() <<" sec"<<std::endl;
 
        disp_q.vec.resize(Nc);
 
        for(int i = 0 ; i < Nc ; ++i ) 
        {
          disp_q.vec[i] = peekColor(vec, i);
        }
 
      } // if find in std::map
 
      snoop.reset();
      snoop.start();
 
      // The key now must exist in the std::map, so return the std::vector
      SmearedDispColorVector_t& disp_q = disp_quark_map.find(key)->second;
 
      snoop.stop(); 
 
      QDPIO::cout << "Retrieved entry from std::map : time = "<< snoop.getTimeInSeconds() << "secs "<<std::endl;
 
      return disp_q.vec;
    }
 
 
    //----------------------------------------------------------------------------
    // Color contract two fermions
    void makeColorSinglet (LatticeComplex& singlet, 
                           const multi1d<LatticeComplex>& q0,
                           const multi1d<LatticeComplex>& q1, 
                           const Subset& subset)
    {
      singlet[subset]  = q0[0] * q1[0];
      for(int i=1; i < q0.size(); ++i)
        singlet[subset] += q0[i] * q1[i];
    }
 
 
    //----------------------------------------------------------------------------
    // Color contract two fermions
    multi2d<DComplex> contractOp (SmearedDispObjects& smrd_disp_vecs,
                                  int n0, const KeySmearedDispColorVector_t& k0,
                                  int n1, const KeySmearedDispColorVector_t& k1,
                                  MesonOpType contractType, 
                                  const SftMom& phases,
                                  int t0)
    {
      multi2d<DComplex> op_sum;
      LatticeComplex singlet;
 
      switch(contractType)
      {
      case MESON_OP_TYPE_SOURCE_SOURCE:
        makeColorSinglet(singlet,
                         smrd_disp_vecs.getDispSource(n0, k0),
                         smrd_disp_vecs.getDispSource(n1, k1),
                         phases.getSet()[t0]);
        op_sum = phases.sft(singlet, t0);
        break;
 
      case MESON_OP_TYPE_SOURCE_SOLUTION:
        makeColorSinglet(singlet,
                         smrd_disp_vecs.getDispSource(n0, k0),
                         smrd_disp_vecs.getDispSolution(n1, k1),
                         phases.getSet()[t0]);
        op_sum = phases.sft(singlet, t0);
        break;
 
      case MESON_OP_TYPE_SOLUTION_SOURCE:
        makeColorSinglet(singlet,
                         smrd_disp_vecs.getDispSolution(n0, k0),
                         smrd_disp_vecs.getDispSource(n1, k1),
                         phases.getSet()[t0]);
        op_sum = phases.sft(singlet, t0);
        break;
 
      case MESON_OP_TYPE_SOLUTION_SOLUTION:
        makeColorSinglet(singlet,
                         smrd_disp_vecs.getDispSolution(n0, k0),
                         smrd_disp_vecs.getDispSolution(n1, k1),
                         all);
        op_sum = phases.sft(singlet);
        break;
      }
 
      return op_sum;
    }
                  
 
    //----------------------------------------------------------------------------
    //! Meson operator
    struct MesonOperator_t
    {
      //! Meson operator time slices corresponding to location of operator source
      struct TimeSlices_t
      {
        //! Meson operator dilutions
        struct Dilutions_t
        {
          //! Momentum projected correlator
          struct Mom_t
          {
            multi1d<int>       mom;         /*!< D-1 momentum of this operator */
            multi1d<DComplex>  op;          /*!< Momentum projected operator */
          };
 
          multi1d<Mom_t> mom_projs;         /*!< Holds momentum projections of the operator */
        };
 
        multi2d<Dilutions_t> dilutions;     /*!< Hybrid list indices */
        int t0;                               /*!< Actual time corresponding to this timeslice */
      };
 
      GroupXML_t    smearing;          /*!< String holding quark smearing xml */
 
      Seed          seed_l;            /*!< Id of left quark */
      Seed          seed_r;            /*!< Id of right quark */
 
      GroupXML_t    dilution_l;        /*!< Dilution scheme of left quark */ 
      GroupXML_t    dilution_r;        /*!< Dilution scheme of right quark */ 
 
      std::string   id;                /*!< Tag/ID used in analysis codes */
 
      MesonOpType   op_contract_type;  /*<! Contraction type for creation op */
      int           mom2_max;          /*!< |\vec{p}|^2 */
      int           decay_dir;         /*!< Direction of decay */
 
      multi1d<TimeSlices_t> time_slices; /*!< Time slices of the lattice that are used */
    };
 
 
    //----------------------------------------------------------------------------
    //! MesonOperator header writer
    void write(XMLWriter& xml, const std::string& path, const MesonOperator_t& param)
    {
      push(xml, path);
 
      int version = 1;
      write(xml, "version", version);
      write(xml, "id", param.id);
      write(xml, "opContractType", param.op_contract_type);
      write(xml, "mom2_max", param.mom2_max);
      write(xml, "decay_dir", param.decay_dir);
      write(xml, "seed_l", param.seed_l);
      write(xml, "seed_r", param.seed_r);
 
      push(xml, "dilution_l");
      xml << param.dilution_l.xml; 
      pop(xml);
 
      push(xml, "dilution_r");
      xml << param.dilution_r.xml; 
      pop(xml);
                        
      xml <<  param.smearing.xml;
        
      pop(xml);
    }
 
 
 
    //! MesonOperator binary writer
    void write(BinaryWriter& bin, const MesonOperator_t::TimeSlices_t::Dilutions_t::Mom_t& param)
    {
      write(bin, param.mom);
      write(bin, param.op);
    }
 
    //! MesonOperator binary writer
    void write(BinaryWriter& bin, const MesonOperator_t::TimeSlices_t::Dilutions_t& param)
    {
      write(bin, param.mom_projs);
    }
 
    //! MesonOperator binary writer
    void write(BinaryWriter& bin, const MesonOperator_t::TimeSlices_t& param)
    {
      write(bin, param.dilutions);
      write(bin, param.t0);
    }
 
    //! MesonOperator binary writer
    void write(BinaryWriter& bin, const MesonOperator_t& param)
    {
      write(bin, param.seed_l);
      write(bin, param.seed_r);
      write(bin, param.mom2_max);
      write(bin, param.decay_dir);
      write(bin, param.time_slices);
    }
 
 
    //! Read 2-quark operators file, assign correct displacement length
    void readOps(TwoQuarkOps_t& oplist, 
                 const std::string& ops_file)
    {
      START_CODE();
 
      TextFileReader reader(ops_file);
 
      int num_ops;
      reader >> num_ops;
      oplist.ops.resize(num_ops);
 
      //Loop over ops within a file
      for(int n=0; n < oplist.ops.size(); ++n)
      {
        std::string name; 
        reader >> name;
        oplist.ops[n].name = name;  
 
        TwoQuarkOps_t::TwoQuarkOp_t& qqq = oplist.ops[n];
        qqq.quark.resize(N_quarks);
 
        // Read 1-based spin
        reader >> qqq.quark[0].spin >> qqq.quark[1].spin;
 
        // Read 1-based displacement only for the right quark
        qqq.quark[0].displacement.resize(1);
        qqq.quark[0].displacement[0] = 0;
 
        int ndisp;
        reader >> ndisp;
        multi1d<int> displacement(ndisp);
        for(int i=0; i < ndisp; ++i)
          reader >> displacement[i];
 
        qqq.quark[1].displacement = displacement;
      } //n
 
      reader.close();
 
      END_CODE();
    } //void readOps
 
 
    //-------------------------------------------------------------------------------
    // Function call
    void 
    InlineMeas::operator()(unsigned long update_no,
                           XMLWriter& xml_out) 
    {
      // If xml file not empty, then use alternate
      if (params.xml_file != "")
      {
        std::string xml_file = makeXMLFileName(params.xml_file, update_no);
 
        push(xml_out, "stoch_meson");
        write(xml_out, "update_no", update_no);
        write(xml_out, "xml_file", xml_file);
        pop(xml_out);
 
        XMLFileWriter xml(xml_file);
        func(update_no, xml);
      }
      else
      {
        func(update_no, xml_out);
      }
    }
 
 
    // Function call
    void 
    InlineMeas::func(unsigned long update_no,
                     XMLWriter& xml_out) 
    {
      START_CODE();
 
      StopWatch snoop;
      snoop.reset();
      snoop.start();
 
      
      StopWatch swiss;
                        
      // Test and grab a reference to the gauge field
      XMLBufferWriter gauge_xml;
      try
      {
        TheNamedObjMap::Instance().getData< multi1d<LatticeColorMatrix> >(params.named_obj.gauge_id);
        TheNamedObjMap::Instance().get(params.named_obj.gauge_id).getRecordXML(gauge_xml);
      }
      catch( std::bad_cast ) 
      {
        QDPIO::cerr << InlineStochGroupMesonEnv::name << ": caught dynamic cast error" 
                    << std::endl;
        QDP_abort(1);
      }
      catch (const std::string& e) 
      {
        QDPIO::cerr << InlineStochGroupMesonEnv::name << ": std::map call failed: " << e 
                    << std::endl;
        QDP_abort(1);
      }
      const multi1d<LatticeColorMatrix>& u = 
        TheNamedObjMap::Instance().getData< multi1d<LatticeColorMatrix> >(params.named_obj.gauge_id);
 
      push(xml_out, "StochGroupMeson");
      write(xml_out, "update_no", update_no);
 
      QDPIO::cout << InlineStochGroupMesonEnv::name << ": Stochastic Meson Operator" << std::endl;
 
      proginfo(xml_out);    // Print out basic program info
 
      // Write out the input
      params.writeXML(xml_out, "Input");
 
      // Write out the config info
      write(xml_out, "Config_info", gauge_xml);
 
      push(xml_out, "Output_version");
      write(xml_out, "out_version", 1);
      pop(xml_out);
 
      //First calculate some gauge invariant observables just for info.
      //This is really cheap.
      MesPlq(xml_out, "Observables", u);
 
      // Save current seed
      Seed ran_seed;
      QDP::RNG::savern(ran_seed);
 
      //
      // Construct the dilution scheme for each of the 2 quarks
      // 
      if (params.param.quark_dils.size() != N_quarks)
      {
        QDPIO::cerr << name << ": expecting 2 quark dilutions" << std::endl;
        QDP_abort(1);
      }
 
      multi1d< Handle< DilutionScheme<LatticeFermion> > > diluted_quarks(N_quarks);  /*!< Here is the big (dil) pickle */
 
      try
      {
        // Loop over the 2 quark dilutions
        for(int n = 0; n < params.param.quark_dils.size(); ++n)
        {
          const GroupXML_t& dil_xml = params.param.quark_dils[n];
 
          std::istringstream  xml_d(dil_xml.xml);
          XMLReader  diltop(xml_d);
          QDPIO::cout << "Dilution type = " << dil_xml.id << std::endl;
        
          diluted_quarks[n] = TheFermDilutionSchemeFactory::Instance().createObject(
            dil_xml.id, diltop, dil_xml.path);
        }
      }
      catch(const std::string& e) 
      {
        QDPIO::cerr << name << ": Caught Exception constructing dilution scheme: " << e << std::endl;
        QDP_abort(1);
      }
//------------------------------------------------------------------------
//Sanity checks 
 
      //The participating timeslices must match for each quark
      //grab info from first quark to prime the work
 
      multi1d<int> participating_timeslices( diluted_quarks[0]->getNumTimeSlices() );
 
      for (int t0 = 0 ; t0 < participating_timeslices.size() ; ++t0)
      {
        participating_timeslices[t0] = diluted_quarks[0]->getT0(t0);
      }
 
      for (int n = 1 ; n < N_quarks ; ++n)
      {
        if ( diluted_quarks[n]->getNumTimeSlices() != participating_timeslices.size() )
        {
          QDPIO::cerr << name << " : Quarks do not contain the same number of dilution timeslices: Quark " 
                      << n << std::endl; 
 
          QDP_abort(1);
        }
 
        for (int t0 = 0 ; t0 < participating_timeslices.size() ; ++t0)
        {
          if  ( diluted_quarks[n]->getT0(t0) != participating_timeslices[t0] )
          {
            QDPIO::cerr << name << " : Quarks do not contain the same participating timeslices: Quark "<<
              n << " timeslice "<< t0 << std::endl;
 
            QDP_abort(1);
          }
        }
      }
                
      //Another Sanity check, the two quarks must all be 
      //inverted on the same cfg
      for (int n = 1 ; n < N_quarks ; ++n)
      {
        if (diluted_quarks[0]->getCfgInfo() != diluted_quarks[n]->getCfgInfo())
        {
          QDPIO::cerr << name 
                      << " : Quarks do not contain the same cfg info, quark "<< n << std::endl;
        
          QDP_abort(1);
        }
                        
      }
 
      //Also ensure that the cfg on which the inversions were performed 
      //is the same as the cfg that we are using
      { 
        std::string cfgInfo; 
 
        //Really ugly way of doing this(Robert Heeeelp!!)
        XMLBufferWriter top;
        write(top, "Config_info", gauge_xml);
        XMLReader from(top);
        XMLReader from2(from, "/Config_info");
        std::ostringstream os;
        from2.print(os);
 
        cfgInfo = os.str();
 
        if (cfgInfo != diluted_quarks[0]->getCfgInfo())
        {
          QDPIO::cerr << name 
                      << " : Quarks do not contain the same cfg info as the gauge field."
                      << "gauge: XX"<<cfgInfo<<"XX quarks: XX"<<diluted_quarks[0]->getCfgInfo()<<"XX"<<  std::endl;
 
 
          QDP_abort(1);
        }
      }
 
      //
      // Initialize the slow Fourier transform phases
      //
      int decay_dir = diluted_quarks[0]->getDecayDir();
 
      SftMom phases(params.param.mom2_max, false, decay_dir);
 
      // Sanity check - if this doesn't work we have serious problems
      if (phases.numSubsets() != QDP::Layout::lattSize()[decay_dir])
      {
        QDPIO::cerr << name << ": number of time slices not equal to that in the decay direction: " 
                    << QDP::Layout::lattSize()[decay_dir]
                    << std::endl;
        QDP_abort(1);
      }
 
                
      // Another sanity check. The seeds of all the quarks must be different
      // and thier decay directions must be the same 
      for(int n = 1 ; n < diluted_quarks.size(); ++n)
      {
        if ( toBool( diluted_quarks[n]->getSeed() == diluted_quarks[0]->getSeed() ) ) 
        {
          QDPIO::cerr << name << ": error, quark seeds are the same" << std::endl;
          QDP_abort(1);
        }
 
        if ( toBool( diluted_quarks[n]->getDecayDir() != diluted_quarks[0]->getDecayDir() ) )
        {
          QDPIO::cerr << name << ": error, quark decay dirs do not match" <<std::endl;
          QDP_abort(1);
        }
 
      }
 
      //
      // Smear the gauge field if needed
      //
      multi1d<LatticeColorMatrix> u_smr = u;
 
      try
      {
        std::istringstream  xml_l(params.param.link_smearing.xml);
        XMLReader  linktop(xml_l);
        QDPIO::cout << "Link smearing type = " << params.param.link_smearing.id << std::endl;
        
        
        Handle< LinkSmearing >
          linkSmearing(TheLinkSmearingFactory::Instance().createObject(params.param.link_smearing.id,
                                                                       linktop, params.param.link_smearing.path));
 
        (*linkSmearing)(u_smr);
      }
      catch(const std::string& e) 
      {
        QDPIO::cerr << name << ": Caught Exception link smearing: " << e << std::endl;
        QDP_abort(1);
      }
 
      MesPlq(xml_out, "Smeared_Observables", u_smr);
 
      //
      // Read operator coefficients
      //
      QDPIO::cout << "Reading 2-quark operators" << std::endl;
      TwoQuarkOps_t qqq_oplist; 
 
      readOps(qqq_oplist, params.named_obj.operators_file.ops_file);
 
      //
      // Create the quark smearing factory 
      //
      Handle< QuarkSmearing<LatticeFermion> > quarkSmearing;
 
      try
      {
        QDPIO::cout << "Create quark smearing object" << std::endl;
 
        // Create the quark smearing object
        std::istringstream  xml_s(params.param.quark_smearing.xml);
        XMLReader  smeartop(xml_s);
        
        quarkSmearing =
          TheFermSmearingFactory::Instance().createObject(params.param.quark_smearing.id,
                                                          smeartop, params.param.quark_smearing.path);
                        
      }
      catch(const std::string& e) 
      {
        QDPIO::cerr << ": Caught Exception creating quark smearing object: " << e << std::endl;
        QDP_abort(1);
      }
      catch(...)
      {
        QDPIO::cerr << ": Caught generic exception creating smearing object" << std::endl;
        QDP_abort(1);
      }
 
      //
      // Meson operators
      //
 
      //We make all source operators before we make all sink operators to 
      //save on memory. 
 
      for(int t0 = 0; t0 < participating_timeslices.size() ; ++t0)
      {
        StopWatch watch;
 
        // Bummer. We have to hold both the smeared sources and the smeared
        // solutions simultaneously since the operator construction might
        // involve both the sources and the solutions in one operator
        // for either the creation and/or annihilation operator
 
        // The object holding the smeared and displaced color std::vector std::maps  
        SmearedDispObjects smrd_disp_vecs(params.param.displacement_length,
                                          diluted_quarks, quarkSmearing, u_smr);
 
        //Make the source operators 
        {
          // Creation operator
          MesonOperator_t  creat_oper;
          creat_oper.op_contract_type = params.param.creat_op_contract_type;
          creat_oper.mom2_max    = params.param.mom2_max;
          creat_oper.decay_dir   = decay_dir;
          creat_oper.seed_l      = diluted_quarks[1]->getSeed();
          creat_oper.seed_r      = diluted_quarks[0]->getSeed();
          creat_oper.dilution_l  = params.param.quark_dils[1];
          creat_oper.dilution_r  = params.param.quark_dils[0];
          creat_oper.smearing    = params.param.quark_smearing;
          creat_oper.time_slices.resize( 1 ); //Only a single t0 per file 
 
          // Construct creation operator
          // Loop over each operator 
          for(int l=0; l < qqq_oplist.ops.size(); ++l)
          {
            QDPIO::cout << "Elemental operator: op = " << l << std::endl;
 
            push(xml_out, "MesonOperator");
 
            creat_oper.id = qqq_oplist.ops[l].name;
 
            write(xml_out, "Name", creat_oper.id);
 
            // Build the operator
            swiss.reset();
            swiss.start();
 
            // The keys for the spin and displacements for this particular elemental operator
            multi1d<KeySmearedDispColorVector_t> keySmearedDispColorVector(N_quarks);
 
            for(int n = 0 ; n < N_quarks ; ++n)
            {
              keySmearedDispColorVector[n].displacement = qqq_oplist.ops[l].quark[n].displacement;
              keySmearedDispColorVector[n].spin         = qqq_oplist.ops[l].quark[n].spin;
            }
 
 
            creat_oper.time_slices[0].t0 = participating_timeslices[t0];
 
            const int n0 = 1;
            const int n1 = 0;
 
            // The operator must hold all the dilutions
 
            // Creation operator
            MesonOperator_t::TimeSlices_t& cop = creat_oper.time_slices[0];
 
            cop.dilutions.resize(diluted_quarks[n0]->getDilSize(t0), diluted_quarks[n1]->getDilSize(t0));
 
            for (int n = 0 ; n < N_quarks ; ++n)
            {
              keySmearedDispColorVector[n].t0 = t0;
            }
 
            for(int i = 0 ; i <  diluted_quarks[n0]->getDilSize(t0) ; ++i)
            {
              for(int j = 0 ; j < diluted_quarks[n1]->getDilSize(t0) ; ++j)
              {
                keySmearedDispColorVector[0].dil = i;
                keySmearedDispColorVector[1].dil = j;
 
                LatticeComplex c_oper;
        
                watch.reset();
                watch.start();
 
                // Do the relevant quark contraction
                // Slow fourier-transform
                // We can restrict what the FT routine requires to a subset.
                multi2d<DComplex> c_sum(contractOp(smrd_disp_vecs,
                                                   n0, keySmearedDispColorVector[0],
                                                   n1, keySmearedDispColorVector[1],
                                                   params.param.creat_op_contract_type,
                                                   phases,
                                                   participating_timeslices[t0]));
                  
                watch.stop();
 
                /*QDPIO::cout << " Spatial sums completed: time = " << 
                  watch.getTimeInSeconds() << "secs " << std::endl;
                */
                // Unpack into separate momentum and correlator
                cop.dilutions(i,j).mom_projs.resize(phases.numMom());
 
                for(int mom_num = 0 ; mom_num < phases.numMom() ; ++mom_num) 
                {
                  cop.dilutions(i,j).mom_projs[mom_num].mom = phases.numToMom(mom_num);
                  cop.dilutions(i,j).mom_projs[mom_num].op.resize(1);
 
                  cop.dilutions(i,j).mom_projs[mom_num].op[ 0 ] = 
                    c_sum[mom_num][ participating_timeslices[t0] ];
                }
              } // end for j
            } // end for i
 
            swiss.stop();
 
 
            QDPIO::cout << "Creation operator construction: operator= " << l 
                        << "  time= "
                        << swiss.getTimeInSeconds() 
                        << " secs" << std::endl;
 
            QDPIO::cout << "Creation operator testval(t0 = " << 
              participating_timeslices[t0] << ") = " << 
              creat_oper.time_slices[0].dilutions(0,0).mom_projs[0].op[0]
                        << std::endl;
 
            //Hard code the elemental op name for now 
            std::stringstream cnvrt;
            cnvrt <<  creat_oper.id  << "_t" << participating_timeslices[t0] << "_src.lime";
 
            std::string filename;
 
            filename = cnvrt.str(); 
 
            // Write the meta-data and the binary for this operator
            swiss.reset();
            swiss.start();
            {
              XMLBufferWriter     src_record_xml, file_xml;
              BinaryBufferWriter  src_record_bin;
 
              push(file_xml, "SourceMesonOperator");
              write(file_xml, "Params", params.param);
              write(file_xml, "Config_info", gauge_xml);
              write(file_xml, "Op_Info",qqq_oplist.ops[l]);
 
              push(file_xml, "QuarkSources");
 
              const int n0 = 1;
              const int n1 = 0;
 
              push(file_xml, "Quark_l");
              push(file_xml, "TimeSlice");
              push(file_xml, "Dilutions");
              for (int dil = 0; dil < diluted_quarks[n0]->getDilSize(t0) ; ++dil)
              {
                write(file_xml, "elem", diluted_quarks[n0]->getSourceHeader(t0, dil));
 
                //      QDPIO::cout<< "t0 = " << t0 << " dil = "<< dil <<
                //      " srdhdr = XX"<<diluted_quarks[n0]->getSourceHeader(t0,dil) << std::endl;
              }
              pop(file_xml); //dilutions 
              pop(file_xml); //TimeSlice
              pop(file_xml); //Quark_l
 
              push(file_xml, "Quark_r");
              push(file_xml, "TimeSlice");
              push(file_xml, "Dilutions");
              for (int dil = 0; dil < diluted_quarks[n1]->getDilSize(t0) ; ++dil)
              {
                write(file_xml, "elem", diluted_quarks[n1]->getSourceHeader(t0, dil));
              }
              pop(file_xml); //dilutions 
              pop(file_xml); //TimeSlice
              pop(file_xml); //Quark_r
 
              pop(file_xml);//QuarkSources
              push(file_xml, "QuarkSinks");
 
              push(file_xml, "Quark_l");
              write(file_xml, "PropHeader", diluted_quarks[n0]->getPropHeader(0,0));
              pop(file_xml);
 
              push(file_xml, "Quark_r");
              write(file_xml, "PropHeader", diluted_quarks[n1]->getPropHeader(0,0));
              pop(file_xml);
 
              pop(file_xml); //Quark Sinks  
              pop(file_xml);//SourceMesonOp
 
              QDPFileWriter qdp_file(file_xml, filename,     // are there one or two files???
                                     QDPIO_SINGLEFILE, QDPIO_SERIAL, QDPIO_OPEN);
 
 
              write(src_record_xml, "MesonCreationOperator", creat_oper);
              write(src_record_bin, creat_oper);
 
              write(qdp_file, src_record_xml, src_record_bin);
 
            }
            swiss.stop();
 
            QDPIO::cout << "Source Operator writing: operator = " << 
              l << "  time= "
                        << swiss.getTimeInSeconds() 
                        << " secs" << std::endl;
 
            pop(xml_out); // MesonOperator 
 
          } // end for l (operator )
 
        } //End Make creation operator
 
 
 
        //Make Annilation Operator
        {
          // Annihilation operator
          MesonOperator_t  annih_oper;
          annih_oper.op_contract_type = params.param.annih_op_contract_type;
          annih_oper.mom2_max    = params.param.mom2_max;
          annih_oper.decay_dir   = decay_dir;
          annih_oper.seed_l      = diluted_quarks[0]->getSeed();
          annih_oper.seed_r      = diluted_quarks[1]->getSeed();
          annih_oper.dilution_l  = params.param.quark_dils[0];
          annih_oper.dilution_r  = params.param.quark_dils[1];
          annih_oper.smearing    = params.param.quark_smearing;
          annih_oper.time_slices.resize( 1 );
 
          // Construct annihilation operator
          QDPIO::cout << "Building Sink operators" << std::endl;
 
          // Loop over each operator 
          for(int l=0; l < qqq_oplist.ops.size(); ++l)
          {
            QDPIO::cout << "Elemental operator: op = " << l << std::endl;
 
            annih_oper.id = qqq_oplist.ops[l].name;
 
            // Build the operator
            swiss.reset();
            swiss.start();
 
            // The keys for the spin and displacements for this particular elemental operator
            multi1d<KeySmearedDispColorVector_t> keySmearedDispColorVector(N_quarks);
 
            for(int n = 0 ; n < N_quarks ; ++n)
            {
              keySmearedDispColorVector[n].displacement = qqq_oplist.ops[l].quark[n].displacement;
              keySmearedDispColorVector[n].spin         = qqq_oplist.ops[l].quark[n].spin;
            }
 
            annih_oper.time_slices[0].t0 = participating_timeslices[t0];
 
            const int n0 = 0;
            const int n1 = 1;
 
            // The operator must hold all the dilutions
            // We know that all time slices match. However, not all time slices of the
            // lattice maybe used
 
            // Annihilation operator
            MesonOperator_t::TimeSlices_t& aop = annih_oper.time_slices[0];
 
            aop.dilutions.resize(diluted_quarks[n0]->getDilSize(t0), diluted_quarks[n1]->getDilSize(t0));
 
            for (int n = 0 ; n < N_quarks ; ++n)
            {
              keySmearedDispColorVector[n].t0 = t0;
            }
 
            for(int i = 0 ; i <  diluted_quarks[n0]->getDilSize(t0) ; ++i)
            {
              for(int j = 0 ; j < diluted_quarks[n1]->getDilSize(t0) ; ++j)           
              {
                keySmearedDispColorVector[0].dil = i;
                keySmearedDispColorVector[1].dil = j;
 
                watch.reset();
                watch.start();
 
                // Contract over color indices
                // Do the relevant quark contraction
                // Slow fourier-transform
                // We can restrict what the FT routine requires to a subset.
                multi2d<DComplex> a_sum(contractOp(smrd_disp_vecs,
                                                   n0, keySmearedDispColorVector[0],
                                                   n1, keySmearedDispColorVector[1],
                                                   params.param.annih_op_contract_type,
                                                   phases,
                                                   participating_timeslices[t0]));
                  
                watch.stop();
                /*
                  QDPIO::cout << "Spatial Sums completed: time " << 
                  watch.getTimeInSeconds() << "secs" << std::endl;
                */              
                // Unpack into separate momentum and correlator
                aop.dilutions(i,j).mom_projs.resize(phases.numMom());
 
                for(int mom_num = 0 ; mom_num < phases.numMom() ; ++mom_num) 
                {
                  aop.dilutions(i,j).mom_projs[mom_num].mom = phases.numToMom(mom_num);
 
                  aop.dilutions(i,j).mom_projs[mom_num].op = a_sum[mom_num];
                }
              } // end for j
            } // end for i
            swiss.stop();
 
 
            QDPIO::cout << "Annihilation operator construction: operator= " << l 
                        << "  time= "
                        << swiss.getTimeInSeconds() 
                        << " secs" << std::endl;
 
            QDPIO::cout << "Annihilation op testval( t0 = " << 
              participating_timeslices[t0] << ") = " << 
              annih_oper.time_slices[0].dilutions(0,0).mom_projs[0].op[0] 
                        << std::endl;
 
            //Hard code the elemental op name for now 
            std::stringstream cnvrt;
            cnvrt <<  annih_oper.id  << "_t" << participating_timeslices[t0] << "_snk.lime";
 
            std::string filename;
 
            filename = cnvrt.str(); 
 
            // Write the meta-data and the binary for this operator
            swiss.reset();
            swiss.start();
            {
              XMLBufferWriter     src_record_xml, file_xml;
              BinaryBufferWriter  src_record_bin;
 
              push(file_xml, "SinkMesonOperator");
              write(file_xml, "Params", params.param);
              write(file_xml, "Config_info", gauge_xml);
              write(file_xml, "Op_Info",qqq_oplist.ops[l]);
              push(file_xml, "QuarkSources");
 
              const int n0 = 0;
              const int n1 = 1;
 
              push(file_xml, "Quark_l");
              push(file_xml, "TimeSlice");
              push(file_xml, "Dilutions");
              for (int dil = 0; dil < diluted_quarks[n0]->getDilSize(t0) ; ++dil)
              {
                write(file_xml, "elem", diluted_quarks[n0]->getSourceHeader(t0, dil));
              }
              pop(file_xml); //dilutions 
              pop(file_xml); //TimeSlice
              pop(file_xml); //Quark_l
 
              push(file_xml, "Quark_r");
              push(file_xml, "TimeSlice");
              push(file_xml, "Dilutions");
              for (int dil = 0; dil < diluted_quarks[n1]->getDilSize(t0) ; ++dil)
              {
                write(file_xml, "elem", diluted_quarks[n1]->getSourceHeader(t0, dil));
              }
              pop(file_xml); //dilutions 
              pop(file_xml); //TimeSlice
              pop(file_xml); //Quark_r
 
              pop(file_xml);//QuarkSources
              push(file_xml, "QuarkSinks");
 
              push(file_xml, "Quark_l");
              write(file_xml, "PropHeader", diluted_quarks[n0]->getPropHeader(0,0));
              pop(file_xml);
 
              push(file_xml, "Quark_r");
              write(file_xml, "PropHeader", diluted_quarks[n1]->getPropHeader(0,0));
              pop(file_xml);
 
              pop(file_xml);//QuarkSinks 
              pop(file_xml);//SinkMesonOperator
 
              QDPFileWriter qdp_file(file_xml, filename,     // are there one or two files???
                                     QDPIO_SINGLEFILE, QDPIO_SERIAL, QDPIO_OPEN);
 
 
              write(src_record_xml, "MesonAnnihilationOperator", annih_oper);
              write(src_record_bin, annih_oper);
 
              write(qdp_file, src_record_xml, src_record_bin);
 
            }
            swiss.stop();
 
            QDPIO::cout << "Annihilation Operator writing: operator = " << l
                        << "  time= " << swiss.getTimeInSeconds() << " secs" << std::endl;
 
          } // end for l (operator )
 
        } //End Make annihilation operator
 
      } //end t0 
 
      // Close the namelist output file XMLDAT
      pop(xml_out);     // StochMeson
 
      snoop.stop();
      QDPIO::cout << InlineStochGroupMesonEnv::name << ": total time = " 
                  << snoop.getTimeInSeconds() 
                  << " secs" << std::endl;
 
      QDPIO::cout << InlineStochGroupMesonEnv::name << ": ran successfully" << std::endl;
 
      END_CODE();
    } // func
 
  } // namespace InlineStochGroupMesonEnv
 
  /*! @} */  // end of group hadron
 
} // namespace Chroma