Sean Gibbons and Claire Duvallet
Correcting batch effects in microbiome case-control studies. Read more...
WaveClust (Oct 2017)
Brian Cleary
OTU time series analysis by wavelet decomposition. Read more...
dbOTU3 (May 2017)
Scott Olesen
Calling ecologically-informed operational taxonomic units. Read more...
TEXMEx (Mar 2015)
Scott Olesen
Visualizing microbial community dynamics. Read more...
Latent strain analysis (Jan 2015)
Brian Cleary
Metagenomic read partitioning by latent factor analysis. Read more...
Mystic (Sep 2014)
Scott Olesen and Sarah Preheim
Inferred biomass biogeochemical model of Mystic Lake. Read more...
Distribution-based clustering (Sep 2014)
Sarah Preheim
Calling ecologically-informed operational taxonomic units. Read more...
symsim 12/05/2012
Jesse Shapiro
Symsim is a simple simulation of sympatric speciation in recombining microbial
populations. Read more...
STARRINIGHTS 12/12/2011
Jesse Shapiro
STARRInIGHTS is a computational pipeline
for inferring homologous recombination breakpoints
inpopulations of
closely related bacterial genomes.
Learn more...
SparCC (July 2011)
Jonathan Friedman
Inference of correlations from 16S sequencing data. Read more...
SHE-RA 4/30/2010
Sonia Timberlake
SHE-RA is a tool that aligns the overlapping pair-end reads and generates composite long reads.
The algorithm is applicable to any short read sequencing
technology, and is open source.
Read more...
ANGST 3/29/2009
Lawrence David
AnGST is a software package for the inference of prokaryotic gene
family evolutionary histories.
