Lab Members

PI: Eric Alm

ericAlm The human microbiome plays a key role in human health and disease. Research in my group includes both computational/theoretical and experimental approaches to understanding and engineering the human microbiome. Our research is focused on translating basic science discoveries rapidly into the clinic, where they can contribute to better outcomes for patients. Some areas of special interest include:
  • Developing therapeutics based on synthetic microbial communities
  • Personalized medicine
  • Monitoring human activities through Smart Sewers
  • Smart Toilets that track human health
  • Discovering low-cost non-invasive biomarkers
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Shandrina Burns
Administrative assistant
burnss at mit dot edu
Tsultrim Palden
Lab manager
tpalden at mit dot edu
Katya Frois-Moniz
Research Scientist/Research Lead
kmoniz at mit dot edu


Ethan Evans
mathieu Mathieu Groussin
Broadly speaking, I am interested in the inference of biological properties of ancient prokaryotic life and in how bacterial and archaeal communities evolve. My main interests focus on the study of genetic data (DNA, proteins) to understand the main evolutionary processes... Read more
thomas Thomas Gurry
The relationship between our health and our microbial inhabitants is poorly understood and likely to be vast in its implications. I am interested in integrating different types of physiological data that have been collected in a continuous fashion, including data pertaining to the microbiome... Read more
siavash Siavash Isazadeh
My research is inspired by the vision that understanding the role of microbial community in natural and engineered systems will allow us to fully harness their power towards achieving sustainable water and wastewater treatment process which ultimately contribute to improving environmental and public health. I am excited to use interdisciplinary approaches of microbial ecology, chemistry, and environmental health... Read more
xiaofang Xiaofang Jiang
To adapt their physiology to gradual and sudden changes occurring in the host environment or during inter-individual transmissions, commensals exhibit remarkable genetic variation diversity at a population level. I am interested in the genetic variations of gut microbes and how the variations are beneficial for their effective colonization and successful survival. I am developing tools and mining genetic variations from isolate genomes and metagenomic data... Read more
mathilde Mathilde Poyet
I am an ecologist with a special interest in biological communities. During my PhD, I characterized the invasion processes of an insect (Drosophila suzukii) and its impact on the invaded communities at different levels of organization. Now, I keep on studying community and ecosystem stability... Read more

Fuqing Wu
anniz An-Ni Zhang
Over the last 4 years, I build a framework to mine new knowledge and potential applications by bioinformatics and big data analysis. I'm now developing the next stage of my career by applying my whole package to this brand new field of human microbiome. I'm building an integrated framework to combine genomes, meta-omics, and isolates... Read more

xiaoqiong Xiaoqiong Gu
I am interested in the relationship between the viromes, human-inducted factors and public health in the city based ecosystem. In the future, I would like to apply the viral metagenomics not only in environmental samples, but also human clinical samples, to capture the virome patterns in these clinical samples and correlate with human disease... Read more

Graduate Students

Nathaniel Nathaniel Chu
I am fascinated by two questions: What processes govern the evolution and ecology of microbial communities? And how can we harness these processes to create practical solutions to problems in human and ecological health? Read more
Chengzhen Dai
Claire Claire Duvallet
Studying the relationships between the microbiome, health, and lifestyle provides incredible opportunities for translational medical discoveries and public health impacts. I'm excited by the possibility of using various physiological data to predict disease states, both on the individualized and broader community levels. Read more
Britta Lotstedt
tu Tu Nguyen
Our body is in constant interaction with the microbial communities inhabiting not only our gastrointestinal tract but also our respiratory system, skin and the reproductive tissues. These diverse microbial communities outnumber our own cells by a 10 to 1 ratio and have been increasingly reported to play important roles in human health and diseases... Read more
annie Xiaoqian (Annie) Yu
I am particularly interested in investigating two things: how does bacterial diversity affect ecosystem processes and how genetic variations of Carbohydrate Active Enzymes in Vibrios are distributed according to their ecological context. We also hope that these investigations will help us become more capable of harnessing the enzymatic capabilities of bacteria for biofuel production. Read more
jay Shijie (Jay) Zhao
The sequencing revolution has immense promises for improving human health. In the Alm lab, I have the opportunity to apply cutting edge genomic technique to study the interplay of microbes and human diseases... Read more
Haixin Sarah Bi

Current Members

Former Members