HST 583 Fall 2006 Calendar


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Date
Lecture

Monday 3:00-4:00 and Wednesday 3:00-4:00 PM
Room E25-119 (except as noted)
Lab

Monday 1:00-2:30 PM
Room 1-115 (except as noted)
Discussion

Wednesday 2:00-3:00 PM
Room E25-119
Overview
9/6
Wed
Introduction to course.
Randy Gollub
Introduction to Functional Magnetic Resonance Imaging.
Bruce Rosen
   
Functional Neural Systems
9/11
Mon
Lab switch
1: fMRI Acqusition Lab II.
Sue Gabrieli, Christina Triantafyllou

McGovern Imaging Center, 46-1164
Directions

Hand out PS # 1.
Solutions
MRI Safety Training (1-1:30pm)
BCS Seminar Room, 46-4062

Randy Gollub

1: fMRI Acquisition Lab I (1:30-3pm),
McGovern Imaging Center, 46-1164
Sue Gabrieli, Christina Triantafyllou
Directions
 
9/13
Wed
Neural Systems II.
Brad Dickerson
Fxnl Neuroanatomy Slides II
  Lecture switch
Neural Systems I.
Brad Dickerson
Fxnl Neuroanatomy Slides I
9/18
Mon
Neural Systems III.
Brad Dickerson
Fxnl Neuroanatomy Slides III
2: Intro to fMRI Data and Analysis
Div Bolar
Rm 26-139
Div's Lab 2 Presentation
Lab 2 Exercises (to be handed in)

LAB 2 SOLUTIONS
 
Imaging Physiology
9/20
Wed
Overview of Imaging Physiology.
Respiratory and cardiovascular physiology impact on fMRI

Robert Banzett
PS #1 due. PS# 2 CANCELLED
  Human Subject Safety Issues
Handout

Randy Gollub
9/25
Mon
No class.
   
9/27
Wed
Cerebrovascular anatomy and neural regulation of CNS blood flow.
Brad Dickerson
Lecture Slides
  Concurrent learning and imaging
John Gabrieli
10/2
Mon
Neurovascular coupling. Global vs. regionally specific changes in CBF and metabolism.
B. Dickerson
Lecture Slides
3: Improving fMRI signal detection using physiological data.
Jennifer Melcher
Lab #2 Due
 
Physics of Image Acquisition
10/4
Wed
MRI Physics I
Karl Helmer
Lecture Slides
  Parallel Imaging
Dan Sodickson
10/9
Mon
No class (Columbus Day)
   
10/11
Wed
MRI Physics III.
Larry Wald
Lecture Slides Physics II and III
Hand out PS #3
  Lecture switch
MRI Physics II.
Larry Wald
Lecture Slides Physics II and III
10/16
Mon
Physics of diffusion weighted imaging.
Karl Helmar
Lecture Slides: Diffusion Imaging
4: The Life Cycle of Medical Imaging Data
Sonia Pujol
 
10/18
Wed
Clinical applications of perfusion weighted imaging
Greg Sorensen
Lecture Slides: Perfusion
Lab #3 Due
  Understanding the issues in the controversial papers on face perception in autism
Nouchine Hadjikhani
10/23
Mon
Lab switch
5: MRI Physics Lab II.
McGovern Imaging Center, 46-1164
Christina Triantafyllou, Larry Wald
5: MR Physics Lab I.
McGovern Imaging Center, 46-1164
Christina Triantafyllou, Larry Wald
Lab 5 Download
 
10/25
Wed
Quantitative fMRI: CBV, CBF, & ASL
Joe Mandeville
Handout
 
Modeling the BOLD signal: CBV and CBF methods and applications
Joe Mandeville
General Principles of Experimental Design
10/30
Mon
General Principles of Experimental Design I
Robert Savoy
Lab #4 Due
6: Diffusion weighted imaging workshop
Sonia Pujol
 
11/1
Wed
General Principles of Experimental Design II
Robert Savoy
 
Functional neuroimaging investigations of memory
Randy Buckner
11/6
Mon
Psychological State Variables in Imaging.
John Gabrieli
PS #3 Due.
Matrix Alegra for fMRI Data Primer
Doug Greve
 
11/8
Wed
Mid-term Exam
Mid-term Exam Answer Key
   
Statistical Analysis
11/13
Mon
Overview of fMRI statistical Analysis. Stats I.
Doug Greve
Doug's Intro slides
Doug's Text outline
Handout PS #4.
Pset 4 Answers
7: Statistical Analysis of fMRI Data I
Rm 26-139
Anastasia Yendiki
 
11/15
Wed
Stats II.
Doug Greve
Lab 5 Due
  Reconciling discrepant fMRI findings
Dara Manoach
11/20
Mon
Stats III.
Doug Greve
7: Statistical Analysis of fMRI Data II
Rm 26-139
Anastasia Yendiki
Lab 6 Due
Lab 7i Due
 
11/22
Wed
Beyond the GLM; exploring connectivity in fMRI data.
Mark Vangel & Doug Greve
  Linking blood flow to neural activity
Christopher Moore
Rescheduled to 12/4
11/27
Mon
Stats IV.
Doug Greve
7: Statistical Analysis of fMRI Data III.
Rm 26-139
Anastasia Yendiki
 
11/29
Wed
Stats V.
Mark Vangel
Mark's Lecture Slides
  Switched to lab:
2 pm START

7: Statistical Analysis of fMRI Data IV.
b Rm 26-139
Anastasia Yendiki
Structural and functional analysis.
12/4
Mon
Spatial normalization for anatomical analysis
David Kennedy
Lecture Slides
Lab 7ii Due
Lab 7iii Due
Switched to discussion NOTE 1pm START!
1 pm - 2 pm
Linking blood flow to neural activity
Chris Moore

2 pm - 3 pm
fMRI evaluation of single subject neural plasticity in somatosensory cortical representation
Vitaly Napadow
Rm E25-119
 
12/6
Wed
Stats VI.
Mark Vangel
PS #4 due.
Lab 7iv DUE ON FRIDAY 12/8
PLEASE PUT UNDER DOOR OF 26-331
  Functional imaging investigation of visual processing
Nancy Kanwisher
12/11
Mon
Surface-based anatomical analysis.
David Salat
David's lecture slides
Extra lab time for Final preparation
MEET IN 1-115 @ 1 pm
 
12/13
Wed
Future Directions in fMRI
Randy Gollub
  Extra TA Office Hours
Div Bolar
12/18
Mon
Final Exam (2:00 PM-4:00 PM) E25-119