Actual source code: petscmat.h

  1: /* $Id: petscmat.h,v 1.228 2001/09/07 20:09:08 bsmith Exp $ */
  2: /*
  3:      Include file for the matrix component of PETSc
  4: */
  5: #ifndef __PETSCMAT_H
 7:  #include petscvec.h

  9: /*S
 10:      Mat - Abstract PETSc matrix object

 12:    Level: beginner

 14:   Concepts: matrix; linear operator

 16: .seealso:  MatCreate(), MatType, MatSetType()
 17: S*/
 18: typedef struct _p_Mat*           Mat;

 20: /*E
 21:     MatType - String with the name of a PETSc matrix or the creation function
 22:        with an optional dynamic library name, for example
 23:        http://www.mcs.anl.gov/petsc/lib.a:mymatcreate()

 25:    Level: beginner

 27: .seealso: MatSetType(), Mat
 28: E*/
 29: #define MATSAME     "same"
 30: #define MATSEQMAIJ  "seqmaij"
 31: #define MATMPIMAIJ  "mpimaij"
 32: #define MATIS       "is"
 33: #define MATMPIROWBS "mpirowbs"
 34: #define MATSEQDENSE "seqdense"
 35: #define MATSEQAIJ   "seqaij"
 36: #define MATMPIAIJ   "mpiaij"
 37: #define MATSHELL    "shell"
 38: #define MATSEQBDIAG "seqbdiag"
 39: #define MATMPIBDIAG "mpibdiag"
 40: #define MATMPIDENSE "mpidense"
 41: #define MATSEQBAIJ  "seqbaij"
 42: #define MATMPIBAIJ  "mpibaij"
 43: #define MATMPIADJ   "mpiadj"
 44: #define MATSEQSBAIJ "seqsbaij"
 45: #define MATMPISBAIJ "mpisbaij"
 46: #define MATDAAD     "daad"
 47: #define MATMFFD     "mffd"
 48: #define MATESI      "esi"
 49: #define MATPETSCESI "petscesi"
 50: #define MATNORMAL   "normal"
 51: #define MATGLENN    "glenn"
 52: typedef char* MatType;

 54: #define MAT_SER_SEQAIJ_BINARY "seqaij_binary"
 55: #define MAT_SER_MPIAIJ_BINARY "mpiaij_binary"
 56: typedef char *MatSerializeType;

 58: /* Logging support */
 59: #define    MAT_FILE_COOKIE 1211216    /* used to indicate matrices in binary files */
 60: extern int MAT_COOKIE;
 61: extern int MATSNESMFCTX_COOKIE;
 62: extern int MAT_FDCOLORING_COOKIE;
 63: extern int MAT_PARTITIONING_COOKIE;
 64: extern int MAT_NULLSPACE_COOKIE;
 65: extern int MAT_Mult, MAT_MultMatrixFree, MAT_Mults, MAT_MultConstrained, MAT_MultAdd, MAT_MultTranspose;
 66: extern int MAT_MultTransposeConstrained, MAT_MultTransposeAdd, MAT_Solve, MAT_Solves, MAT_SolveAdd, MAT_SolveTranspose;
 67: extern int MAT_SolveTransposeAdd, MAT_Relax, MAT_ForwardSolve, MAT_BackwardSolve, MAT_LUFactor, MAT_LUFactorSymbolic;
 68: extern int MAT_LUFactorNumeric, MAT_CholeskyFactor, MAT_CholeskyFactorSymbolic, MAT_CholeskyFactorNumeric, MAT_ILUFactor;
 69: extern int MAT_ILUFactorSymbolic, MAT_ICCFactorSymbolic, MAT_Copy, MAT_Convert, MAT_Scale, MAT_AssemblyBegin;
 70: extern int MAT_AssemblyEnd, MAT_SetValues, MAT_GetValues, MAT_GetRow, MAT_GetSubMatrices, MAT_GetColoring, MAT_GetOrdering;
 71: extern int MAT_IncreaseOverlap, MAT_Partitioning, MAT_ZeroEntries, MAT_Load, MAT_View, MAT_AXPY, MAT_FDColoringCreate;
 72: extern int MAT_FDColoringApply, MAT_Transpose;

 74: EXTERN int MatInitializePackage(char *);

 76: EXTERN int MatCreate(MPI_Comm,int,int,int,int,Mat*);
 77: EXTERN int MatSetType(Mat,MatType);
 78: EXTERN int MatSetFromOptions(Mat);
 79: EXTERN int MatSetUpPreallocation(Mat);
 80: EXTERN int MatRegisterAll(char*);
 81: EXTERN int MatRegister(char*,char*,char*,int(*)(Mat));
 82: EXTERN int MatSerializeRegister(const char [], const char [], const char [], int (*)(MPI_Comm, Mat *, PetscViewer, PetscTruth));
 83: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
 84: #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,0)
 85: #define MatSerializeRegisterDynamic(a,b,c,d) MatSerializeRegister(a,b,c,0)
 86: #else
 87: #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,d)
 88: #define MatSerializeRegisterDynamic(a,b,c,d) MatSerializeRegister(a,b,c,d)
 89: #endif
 90: extern PetscTruth MatRegisterAllCalled;
 91: extern PetscFList MatList;

 93: EXTERN PetscFList MatSerializeList;
 94: EXTERN int MatSerializeRegisterAll(const char []);
 95: EXTERN int MatSerializeRegisterDestroy(void);
 96: EXTERN int MatSerializeRegisterAllCalled;
 97: EXTERN int MatSerialize(MPI_Comm, Mat *, PetscViewer, PetscTruth);
 98: EXTERN int MatSetSerializeType(Mat, MatSerializeType);

100: EXTERN int MatCreateSeqDense(MPI_Comm,int,int,PetscScalar*,Mat*);
101: EXTERN int MatCreateMPIDense(MPI_Comm,int,int,int,int,PetscScalar*,Mat*);
102: EXTERN int MatCreateSeqAIJ(MPI_Comm,int,int,int,int*,Mat*);
103: EXTERN int MatCreateMPIAIJ(MPI_Comm,int,int,int,int,int,int*,int,int*,Mat*);
104: EXTERN int MatCreateMPIRowbs(MPI_Comm,int,int,int,int*,Mat*);
105: EXTERN int MatCreateSeqBDiag(MPI_Comm,int,int,int,int,int*,PetscScalar**,Mat*);
106: EXTERN int MatCreateMPIBDiag(MPI_Comm,int,int,int,int,int,int*,PetscScalar**,Mat*);
107: EXTERN int MatCreateSeqBAIJ(MPI_Comm,int,int,int,int,int*,Mat*);
108: EXTERN int MatCreateMPIBAIJ(MPI_Comm,int,int,int,int,int,int,int*,int,int*,Mat*);
109: EXTERN int MatCreateMPIAdj(MPI_Comm,int,int,int*,int*,int *,Mat*);
110: EXTERN int MatCreateSeqSBAIJ(MPI_Comm,int,int,int,int,int*,Mat*);
111: EXTERN int MatCreateMPISBAIJ(MPI_Comm,int,int,int,int,int,int,int*,int,int*,Mat*);
112: EXTERN int MatCreateShell(MPI_Comm,int,int,int,int,void *,Mat*);
113: EXTERN int MatCreateAdic(MPI_Comm,int,int,int,int,int,void (*)(void),Mat*);
114: EXTERN int MatCreateNormal(Mat,Mat*);
115: EXTERN int MatDestroy(Mat);

117: EXTERN int MatPrintHelp(Mat);
118: EXTERN int MatGetPetscMaps(Mat,PetscMap*,PetscMap*);

120: /* ------------------------------------------------------------*/
121: EXTERN int MatSetValues(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
122: EXTERN int MatSetValuesBlocked(Mat,int,int*,int,int*,PetscScalar*,InsertMode);

124: /*S
125:      MatStencil - Data structure (C struct) for storing information about a single row or
126:         column of a matrix as index on an associated grid.

128:    Level: beginner

130:   Concepts: matrix; linear operator

132: .seealso:  MatSetValuesStencil(), MatSetStencil()
133: S*/
134: typedef struct {
135:   int k,j,i,c;
136: } MatStencil;

138: EXTERN int MatSetValuesStencil(Mat,int,MatStencil*,int,MatStencil*,PetscScalar*,InsertMode);
139: EXTERN int MatSetValuesBlockedStencil(Mat,int,MatStencil*,int,MatStencil*,PetscScalar*,InsertMode);
140: EXTERN int MatSetStencil(Mat,int,int*,int*,int);

142: EXTERN int MatSetColoring(Mat,ISColoring);
143: EXTERN int MatSetValuesAdic(Mat,void*);
144: EXTERN int MatSetValuesAdifor(Mat,int,void*);

146: /*E
147:     MatAssemblyType - Indicates if the matrix is now to be used, or if you plan 
148:      to continue to add values to it

150:     Level: beginner

152: .seealso: MatAssemblyBegin(), MatAssemblyEnd()
153: E*/
154: typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType;
155: EXTERN int MatAssemblyBegin(Mat,MatAssemblyType);
156: EXTERN int MatAssemblyEnd(Mat,MatAssemblyType);
157: EXTERN int MatAssembled(Mat,PetscTruth*);

159: #define MatSetValue(v,i,j,va,mode) 
160: 0; {int _ierr,_row = i,_col = j; PetscScalar _va = va; 
161:   _MatSetValues(v,1,&_row,1,&_col,&_va,mode);CHKERRQ(_ierr); 
162: }
163: #define MatGetValue(v,i,j,va) 
164: 0; {int _ierr,_row = i,_col = j; 
165:   _MatGetValues(v,1,&_row,1,&_col,&va);CHKERRQ(_ierr); 
166: }
167: #define MatSetValueLocal(v,i,j,va,mode) 
168: 0; {int _ierr,_row = i,_col = j; PetscScalar _va = va; 
169:   _MatSetValuesLocal(v,1,&_row,1,&_col,&_va,mode);CHKERRQ(_ierr); 
170: }
171: /*E
172:     MatOption - Options that may be set for a matrix and its behavior or storage

174:     Level: beginner

176:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

178: .seealso: MatSetOption()
179: E*/
180: typedef enum {MAT_ROW_ORIENTED=1,MAT_COLUMN_ORIENTED=2,MAT_ROWS_SORTED=4,
181:               MAT_COLUMNS_SORTED=8,MAT_NO_NEW_NONZERO_LOCATIONS=16,
182:               MAT_YES_NEW_NONZERO_LOCATIONS=32,MAT_SYMMETRIC=64,
183:               MAT_STRUCTURALLY_SYMMETRIC=65,MAT_NO_NEW_DIAGONALS=66,
184:               MAT_YES_NEW_DIAGONALS=67,MAT_INODE_LIMIT_1=68,MAT_INODE_LIMIT_2=69,
185:               MAT_INODE_LIMIT_3=70,MAT_INODE_LIMIT_4=71,MAT_INODE_LIMIT_5=72,
186:               MAT_IGNORE_OFF_PROC_ENTRIES=73,MAT_ROWS_UNSORTED=74,
187:               MAT_COLUMNS_UNSORTED=75,MAT_NEW_NONZERO_LOCATION_ERR=76,
188:               MAT_NEW_NONZERO_ALLOCATION_ERR=77,MAT_USE_HASH_TABLE=78,
189:               MAT_KEEP_ZEROED_ROWS=79,MAT_IGNORE_ZERO_ENTRIES=80,MAT_USE_INODES=81,
190:               MAT_DO_NOT_USE_INODES=82} MatOption;
191: EXTERN int MatSetOption(Mat,MatOption);
192: EXTERN int MatGetType(Mat,MatType*);

194: EXTERN int MatGetValues(Mat,int,int*,int,int*,PetscScalar*);
195: EXTERN int MatGetRow(Mat,int,int *,int **,PetscScalar**);
196: EXTERN int MatRestoreRow(Mat,int,int *,int **,PetscScalar**);
197: EXTERN int MatGetColumn(Mat,int,int *,int **,PetscScalar**);
198: EXTERN int MatRestoreColumn(Mat,int,int *,int **,PetscScalar**);
199: EXTERN int MatGetColumnVector(Mat,Vec,int);
200: EXTERN int MatGetArray(Mat,PetscScalar **);
201: EXTERN int MatRestoreArray(Mat,PetscScalar **);
202: EXTERN int MatGetBlockSize(Mat,int *);

204: EXTERN int MatMult(Mat,Vec,Vec);
205: EXTERN int MatMultAdd(Mat,Vec,Vec,Vec);
206: EXTERN int MatMultTranspose(Mat,Vec,Vec);
207: EXTERN int MatMultTransposeAdd(Mat,Vec,Vec,Vec);
208: EXTERN int MatMultConstrained(Mat,Vec,Vec);
209: EXTERN int MatMultTransposeConstrained(Mat,Vec,Vec);

211: /*E
212:     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
213:   its numerical values copied over or just its nonzero structure.

215:     Level: beginner

217:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

219: .seealso: MatDuplicate()
220: E*/
221: typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES} MatDuplicateOption;

223: EXTERN int MatConvertRegister(char*,char*,char*,int (*)(Mat,MatType,Mat*));
224: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
225: #define MatConvertRegisterDynamic(a,b,c,d) MatConvertRegister(a,b,c,0)
226: #else
227: #define MatConvertRegisterDynamic(a,b,c,d) MatConvertRegister(a,b,c,d)
228: #endif
229: EXTERN int        MatConvertRegisterAll(char*);
230: EXTERN int        MatConvertRegisterDestroy(void);
231: extern PetscTruth MatConvertRegisterAllCalled;
232: extern PetscFList MatConvertList;
233: EXTERN int        MatConvert(Mat,MatType,Mat*);
234: EXTERN int        MatDuplicate(Mat,MatDuplicateOption,Mat*);

236: /*E
237:     MatStructure - Indicates if the matrix has the same nonzero structure

239:     Level: beginner

241:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

243: .seealso: MatCopy(), SLESSetOperators(), PCSetOperators()
244: E*/
245: typedef enum {SAME_NONZERO_PATTERN,DIFFERENT_NONZERO_PATTERN,SAME_PRECONDITIONER} MatStructure;

247: EXTERN int MatCopy(Mat,Mat,MatStructure);
248: EXTERN int MatView(Mat,PetscViewer);

250: EXTERN int MatLoadRegister(char*,char*,char*,int (*)(PetscViewer,MatType,Mat*));
251: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
252: #define MatLoadRegisterDynamic(a,b,c,d) MatLoadRegister(a,b,c,0)
253: #else
254: #define MatLoadRegisterDynamic(a,b,c,d) MatLoadRegister(a,b,c,d)
255: #endif
256: EXTERN int        MatLoadRegisterAll(char*);
257: EXTERN int        MatLoadRegisterDestroy(void);
258: extern PetscTruth MatLoadRegisterAllCalled;
259: extern PetscFList MatLoadList;
260: EXTERN int        MatLoad(PetscViewer,MatType,Mat*);
261: EXTERN int        MatMerge(MPI_Comm,Mat,Mat*);

263: EXTERN int MatGetRowIJ(Mat,int,PetscTruth,int*,int **,int **,PetscTruth *);
264: EXTERN int MatRestoreRowIJ(Mat,int,PetscTruth,int *,int **,int **,PetscTruth *);
265: EXTERN int MatGetColumnIJ(Mat,int,PetscTruth,int*,int **,int **,PetscTruth *);
266: EXTERN int MatRestoreColumnIJ(Mat,int,PetscTruth,int *,int **,int **,PetscTruth *);

268: /*S
269:      MatInfo - Context of matrix information, used with MatGetInfo()

271:    In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE

273:    Level: intermediate

275:   Concepts: matrix^nonzero information

277: .seealso:  MatGetInfo(), MatInfoType
278: S*/
279: typedef struct {
280:   PetscLogDouble rows_global,columns_global;         /* number of global rows and columns */
281:   PetscLogDouble rows_local,columns_local;           /* number of local rows and columns */
282:   PetscLogDouble block_size;                         /* block size */
283:   PetscLogDouble nz_allocated,nz_used,nz_unneeded;   /* number of nonzeros */
284:   PetscLogDouble memory;                             /* memory allocated */
285:   PetscLogDouble assemblies;                         /* number of matrix assemblies called */
286:   PetscLogDouble mallocs;                            /* number of mallocs during MatSetValues() */
287:   PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */
288:   PetscLogDouble factor_mallocs;                     /* number of mallocs during factorization */
289: } MatInfo;

291: /*E
292:     MatInfoType - Indicates if you want information about the local part of the matrix,
293:      the entire parallel matrix or the maximum over all the local parts.

295:     Level: beginner

297:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

299: .seealso: MatGetInfo(), MatInfo
300: E*/
301: typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType;
302: EXTERN int MatGetInfo(Mat,MatInfoType,MatInfo*);
303: EXTERN int MatValid(Mat,PetscTruth*);
304: EXTERN int MatGetDiagonal(Mat,Vec);
305: EXTERN int MatGetRowMax(Mat,Vec);
306: EXTERN int MatTranspose(Mat,Mat*);
307: EXTERN int MatPermute(Mat,IS,IS,Mat *);
308: EXTERN int MatPermuteSparsify(Mat,int,PetscReal,PetscReal,IS,IS,Mat *);
309: EXTERN int MatDiagonalScale(Mat,Vec,Vec);
310: EXTERN int MatDiagonalSet(Mat,Vec,InsertMode);
311: EXTERN int MatEqual(Mat,Mat,PetscTruth*);

313: EXTERN int MatNorm(Mat,NormType,PetscReal *);
314: EXTERN int MatZeroEntries(Mat);
315: EXTERN int MatZeroRows(Mat,IS,PetscScalar*);
316: EXTERN int MatZeroColumns(Mat,IS,PetscScalar*);

318: EXTERN int MatUseScaledForm(Mat,PetscTruth);
319: EXTERN int MatScaleSystem(Mat,Vec,Vec);
320: EXTERN int MatUnScaleSystem(Mat,Vec,Vec);

322: EXTERN int MatGetSize(Mat,int*,int*);
323: EXTERN int MatGetLocalSize(Mat,int*,int*);
324: EXTERN int MatGetOwnershipRange(Mat,int*,int*);

326: /*E
327:     MatReuse - Indicates if matrices obtained from a previous call to MatGetSubMatrices()
328:      or MatGetSubMatrix() are to be reused to store the new matrix values.

330:     Level: beginner

332:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

334: .seealso: MatGetSubMatrices(), MatGetSubMatrix(), MatDestroyMatrices()
335: E*/
336: typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX} MatReuse;
337: EXTERN int MatGetSubMatrices(Mat,int,IS *,IS *,MatReuse,Mat **);
338: EXTERN int MatDestroyMatrices(int,Mat **);
339: EXTERN int MatGetSubMatrix(Mat,IS,IS,int,MatReuse,Mat *);

341: EXTERN int MatIncreaseOverlap(Mat,int,IS *,int);

343: EXTERN int MatAXPY(PetscScalar *,Mat,Mat,MatStructure);
344: EXTERN int MatAYPX(PetscScalar *,Mat,Mat);
345: EXTERN int MatCompress(Mat);

347: EXTERN int MatScale(PetscScalar *,Mat);
348: EXTERN int MatShift(PetscScalar *,Mat);

350: EXTERN int MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping);
351: EXTERN int MatSetLocalToGlobalMappingBlock(Mat,ISLocalToGlobalMapping);
352: EXTERN int MatZeroRowsLocal(Mat,IS,PetscScalar*);
353: EXTERN int MatSetValuesLocal(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
354: EXTERN int MatSetValuesBlockedLocal(Mat,int,int*,int,int*,PetscScalar*,InsertMode);

356: EXTERN int MatSetStashInitialSize(Mat,int,int);

358: EXTERN int MatInterpolateAdd(Mat,Vec,Vec,Vec);
359: EXTERN int MatInterpolate(Mat,Vec,Vec);
360: EXTERN int MatRestrict(Mat,Vec,Vec);

362: /*
363:       These three (or four) macros MUST be used together. The third one closes the open { of the first one
364: */
365: #define MatPreallocateInitialize(comm,nrows,ncols,dnz,onz) 0; 
366: { 
367:   int _4_ierr,__tmp = (nrows),__ctmp = (ncols),__rstart,__start,__end; 
368:   _4_PetscMalloc(2*__tmp*sizeof(int),&dnz);CHKERRQ(_4_ierr);onz = dnz + __tmp;
369:   _4_PetscMemzero(dnz,2*__tmp*sizeof(int));CHKERRQ(_4_ierr);
370:   _4_MPI_Scan(&__ctmp,&__end,1,MPI_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __start = __end - __ctmp;
371:   _4_MPI_Scan(&__tmp,&__rstart,1,MPI_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __tmp;

373: #define MatPreallocateSymmetricInitialize(comm,nrows,ncols,dnz,onz) 0; 
374: { 
375:   int _4_ierr,__tmp = (nrows),__ctmp = (ncols),__rstart,__end; 
376:   _4_PetscMalloc(2*__tmp*sizeof(int),&dnz);CHKERRQ(_4_ierr);onz = dnz + __tmp;
377:   _4_PetscMemzero(dnz,2*__tmp*sizeof(int));CHKERRQ(_4_ierr);
378:   _4_MPI_Scan(&__ctmp,&__end,1,MPI_INT,MPI_SUM,comm);CHKERRQ(_4_ierr);
379:   _4_MPI_Scan(&__tmp,&__rstart,1,MPI_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __tmp;

381: #define MatPreallocateSetLocal(map,nrows,rows,ncols,cols,dnz,onz) 0;
382: {
383:   int __l;
384:   _4_ISLocalToGlobalMappingApply(map,nrows,rows,rows);CHKERRQ(_4_ierr);
385:   _4_ISLocalToGlobalMappingApply(map,ncols,cols,cols);CHKERRQ(_4_ierr);
386:   for (__l=0;__l<nrows;__l++) {
387:     _4_MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);
388:   }
389: }
390: 
391: #define MatPreallocateSymmetricSetLocal(map,nrows,rows,ncols,cols,dnz,onz) 0;
392: {
393:   int __l;
394:   _4_ISLocalToGlobalMappingApply(map,nrows,rows,rows);CHKERRQ(_4_ierr);
395:   _4_ISLocalToGlobalMappingApply(map,ncols,cols,cols);CHKERRQ(_4_ierr);
396:   for (__l=0;__l<nrows;__l++) {
397:     _4_MatPreallocateSymmetricSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);
398:   }
399: }

401: #define MatPreallocateSet(row,nc,cols,dnz,onz) 0;
402: { int __i; 
403:   for (__i=0; __i<nc; __i++) {
404:     if (cols[__i] < __start || cols[__i] >= __end) onz[row - __rstart]++; 
405:   }
406:   dnz[row - __rstart] = nc - onz[row - __rstart];
407: }

409: #define MatPreallocateSymmetricSet(row,nc,cols,dnz,onz) 0;
410: { int __i; 
411:   for (__i=0; __i<nc; __i++) {
412:     if (cols[__i] >= __end) onz[row - __rstart]++; 
413:     else if (cols[__i] >= row) dnz[row - __rstart]++;
414:   }
415: }

417: #define MatPreallocateFinalize(dnz,onz) 0;_4_PetscFree(dnz);CHKERRQ(_4_ierr);}

419: /* Routines unique to particular data structures */
420: EXTERN int MatShellGetContext(Mat,void **);

422: EXTERN int MatBDiagGetData(Mat,int*,int*,int**,int**,PetscScalar***);
423: EXTERN int MatSeqAIJSetColumnIndices(Mat,int *);
424: EXTERN int MatSeqBAIJSetColumnIndices(Mat,int *);
425: EXTERN int MatCreateSeqAIJWithArrays(MPI_Comm,int,int,int*,int*,PetscScalar *,Mat*);

427: EXTERN int MatSeqBAIJSetPreallocation(Mat,int,int,int*);
428: EXTERN int MatSeqSBAIJSetPreallocation(Mat,int,int,int*);
429: EXTERN int MatSeqAIJSetPreallocation(Mat,int,int*);
430: EXTERN int MatSeqDensePreallocation(Mat,PetscScalar*);
431: EXTERN int MatSeqBDiagSetPreallocation(Mat,int,int,int*,PetscScalar**);
432: EXTERN int MatSeqDenseSetPreallocation(Mat,PetscScalar*);

434: EXTERN int MatMPIBAIJSetPreallocation(Mat,int,int,int*,int,int*);
435: EXTERN int MatMPISBAIJSetPreallocation(Mat,int,int,int*,int,int*);
436: EXTERN int MatMPIAIJSetPreallocation(Mat,int,int*,int,int*);
437: EXTERN int MatMPIDensePreallocation(Mat,PetscScalar*);
438: EXTERN int MatMPIBDiagSetPreallocation(Mat,int,int,int*,PetscScalar**);
439: EXTERN int MatMPIAdjSetPreallocation(Mat,int*,int*,int*);
440: EXTERN int MatMPIDenseSetPreallocation(Mat,PetscScalar*);
441: EXTERN int MatMPIRowbsSetPreallocation(Mat,int,int*);
442: EXTERN int MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,int**);
443: EXTERN int MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,int**);
444: EXTERN int MatAdicSetLocalFunction(Mat,void (*)(void));

446: EXTERN int MatStoreValues(Mat);
447: EXTERN int MatRetrieveValues(Mat);

449: EXTERN int MatDAADSetCtx(Mat,void*);

451: /* 
452:   These routines are not usually accessed directly, rather solving is 
453:   done through the SLES, KSP and PC interfaces.
454: */

456: /*E
457:     MatOrderingType - String with the name of a PETSc matrix ordering or the creation function
458:        with an optional dynamic library name, for example 
459:        http://www.mcs.anl.gov/petsc/lib.a:orderingcreate()

461:    Level: beginner

463: .seealso: MatGetOrdering()
464: E*/
465: typedef char* MatOrderingType;
466: #define MATORDERING_NATURAL   "natural"
467: #define MATORDERING_ND        "nd"
468: #define MATORDERING_1WD       "1wd"
469: #define MATORDERING_RCM       "rcm"
470: #define MATORDERING_QMD       "qmd"
471: #define MATORDERING_ROWLENGTH "rowlength"
472: #define MATORDERING_DSC_ND    "dsc_nd"
473: #define MATORDERING_DSC_MMD   "dsc_mmd"
474: #define MATORDERING_DSC_MDF   "dsc_mdf"
475: #define MATORDERING_CONSTRAINED "constrained"
476: #define MATORDERING_IDENTITY  "identity"
477: #define MATORDERING_REVERSE   "reverse"

479: EXTERN int MatGetOrdering(Mat,MatOrderingType,IS*,IS*);
480: EXTERN int MatOrderingRegister(char*,char*,char*,int(*)(Mat,MatOrderingType,IS*,IS*));
481: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
482: #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,0)
483: #else
484: #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,d)
485: #endif
486: EXTERN int        MatOrderingRegisterDestroy(void);
487: EXTERN int        MatOrderingRegisterAll(char*);
488: extern PetscTruth MatOrderingRegisterAllCalled;
489: extern PetscFList      MatOrderingList;

491: EXTERN int MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS);

493: EXTERN int MatCholeskyFactor(Mat,IS,PetscReal);
494: EXTERN int MatCholeskyFactorSymbolic(Mat,IS,PetscReal,Mat*);
495: EXTERN int MatCholeskyFactorNumeric(Mat,Mat*);

497: /*S 
498:    MatILUInfo - Data based into the matrix ILU factorization routines

500:    In Fortran these are simply double precision arrays of size MAT_ILUINFO_SIZE

502:    Notes: These are not usually directly used by users, instead use the PC type of ILU
503:           All entries are double precision.

505:    Level: developer

507: .seealso: MatILUFactorSymbolic(), MatILUFactor(), MatLUInfo, MatCholeskyInfo

509: S*/
510: typedef struct {
511:   PetscReal     levels;         /* ILU(levels) */
512:   PetscReal     fill;           /* expected fill; nonzeros in factored matrix/nonzeros in original matrix*/
513:   PetscReal     diagonal_fill;  /* force diagonal to fill in if initially not filled */
514:   PetscReal     dt;             /* drop tolerance */
515:   PetscReal     dtcol;          /* tolerance for pivoting */
516:   PetscReal     dtcount;        /* maximum nonzeros to be allowed per row */
517:   PetscReal     damping;        /* scaling of identity added to matrix to prevent zero pivots */
518:   PetscReal     damp;           /* if is 1.0 and factorization fails, damp until successful */
519:   PetscReal     zeropivot; /* pivot is called zero if less than this */
520:   PetscReal     pivotinblocks;  /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 
521:                                    factorization may be faster if do not pivot */
522: } MatILUInfo;

524: /*S 
525:    MatLUInfo - Data based into the matrix LU factorization routines

527:    In Fortran these are simply double precision arrays of size MAT_LUINFO_SIZE

529:    Notes: These are not usually directly used by users, instead use the PC type of LU
530:           All entries are double precision.

532:    Level: developer

534: .seealso: MatLUFactorSymbolic(), MatILUInfo, MatCholeskyInfo

536: S*/
537: typedef struct {
538:   PetscReal     fill;    /* expected fill; nonzeros in factored matrix/nonzeros in original matrix */
539:   PetscReal     dtcol;   /* tolerance for pivoting; pivot if off_diagonal*dtcol > diagonal */
540:   PetscReal     damping; /* scaling of identity added to matrix to prevent zero pivots */
541:   PetscReal     zeropivot; /* pivot is called zero if less than this */
542:   PetscReal     pivotinblocks;  /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 
543:                                    factorization may be faster if do not pivot */
544: } MatLUInfo;

546: /*S 
547:    MatCholeskyInfo - Data based into the matrix Cholesky factorization routines

549:    In Fortran these are simply double precision arrays of size MAT_CHOLESKYINFO_SIZE

551:    Notes: These are not usually directly used by users, instead use the PC type of Cholesky
552:           All entries are double precision.

554:    Level: developer

556: .seealso: MatCholeskyFactorSymbolic(), MatLUInfo, MatILUInfo

558: S*/
559: typedef struct {
560:   PetscReal     fill;    /* expected fill; nonzeros in factored matrix/nonzeros in original matrix */
561:   PetscReal     damping; /* scaling of identity added to matrix to prevent zero pivots */
562:   PetscReal     pivotinblocks;  /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 
563:                                    factorization may be faster if do not pivot */
564: } MatCholeskyInfo;

566: EXTERN int MatLUFactor(Mat,IS,IS,MatLUInfo*);
567: EXTERN int MatILUFactor(Mat,IS,IS,MatILUInfo*);
568: EXTERN int MatLUFactorSymbolic(Mat,IS,IS,MatLUInfo*,Mat*);
569: EXTERN int MatILUFactorSymbolic(Mat,IS,IS,MatILUInfo*,Mat*);
570: EXTERN int MatICCFactorSymbolic(Mat,IS,PetscReal,int,Mat*);
571: EXTERN int MatICCFactor(Mat,IS,PetscReal,int);
572: EXTERN int MatLUFactorNumeric(Mat,Mat*);
573: EXTERN int MatILUDTFactor(Mat,MatILUInfo*,IS,IS,Mat *);
574: EXTERN int MatGetInertia(Mat,int*,int*,int*);
575: EXTERN int MatSolve(Mat,Vec,Vec);
576: EXTERN int MatForwardSolve(Mat,Vec,Vec);
577: EXTERN int MatBackwardSolve(Mat,Vec,Vec);
578: EXTERN int MatSolveAdd(Mat,Vec,Vec,Vec);
579: EXTERN int MatSolveTranspose(Mat,Vec,Vec);
580: EXTERN int MatSolveTransposeAdd(Mat,Vec,Vec,Vec);
581: EXTERN int MatSolves(Mat,Vecs,Vecs);

583: EXTERN int MatSetUnfactored(Mat);

585: /*  MatSORType may be bitwise ORd together, so do not change the numbers */
586: /*E
587:     MatSORType - What type of (S)SOR to perform

589:     Level: beginner

591:    May be bitwise ORd together

593:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

595: .seealso: MatRelax()
596: E*/
597: typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3,
598:               SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8,
599:               SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16,
600:               SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType;
601: EXTERN int MatRelax(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);

603: /* 
604:     These routines are for efficiently computing Jacobians via finite differences.
605: */

607: /*E
608:     MatColoringType - String with the name of a PETSc matrix coloring or the creation function
609:        with an optional dynamic library name, for example 
610:        http://www.mcs.anl.gov/petsc/lib.a:coloringcreate()

612:    Level: beginner

614: .seealso: MatGetColoring()
615: E*/
616: typedef char* MatColoringType;
617: #define MATCOLORING_NATURAL "natural"
618: #define MATCOLORING_SL      "sl"
619: #define MATCOLORING_LF      "lf"
620: #define MATCOLORING_ID      "id"

622: EXTERN int MatGetColoring(Mat,MatColoringType,ISColoring*);
623: EXTERN int MatColoringRegister(char*,char*,char*,int(*)(Mat,MatColoringType,ISColoring *));
624: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
625: #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,0)
626: #else
627: #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,d)
628: #endif
629: EXTERN int        MatColoringRegisterAll(char *);
630: extern PetscTruth MatColoringRegisterAllCalled;
631: EXTERN int        MatColoringRegisterDestroy(void);
632: EXTERN int        MatColoringPatch(Mat,int,int,int *,ISColoring*);

634: /*S
635:      MatFDColoring - Object for computing a sparse Jacobian via finite differences
636:         and coloring

638:    Level: beginner

640:   Concepts: coloring, sparse Jacobian, finite differences

642: .seealso:  MatFDColoringCreate()
643: S*/
644: typedef struct _p_MatFDColoring *MatFDColoring;

646: EXTERN int MatFDColoringCreate(Mat,ISColoring,MatFDColoring *);
647: EXTERN int MatFDColoringDestroy(MatFDColoring);
648: EXTERN int MatFDColoringView(MatFDColoring,PetscViewer);
649: EXTERN int MatFDColoringSetFunction(MatFDColoring,int (*)(void),void*);
650: EXTERN int MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal);
651: EXTERN int MatFDColoringSetFrequency(MatFDColoring,int);
652: EXTERN int MatFDColoringGetFrequency(MatFDColoring,int*);
653: EXTERN int MatFDColoringSetFromOptions(MatFDColoring);
654: EXTERN int MatFDColoringApply(Mat,MatFDColoring,Vec,MatStructure*,void *);
655: EXTERN int MatFDColoringApplyTS(Mat,MatFDColoring,PetscReal,Vec,MatStructure*,void *);
656: EXTERN int MatFDColoringSetRecompute(MatFDColoring);
657: EXTERN int MatFDColoringSetF(MatFDColoring,Vec);
658: EXTERN int MatFDColoringGetPerturbedColumns(MatFDColoring,int*,int**);
659: /* 
660:     These routines are for partitioning matrices: currently used only 
661:   for adjacency matrix, MatCreateMPIAdj().
662: */

664: /*S
665:      MatPartitioning - Object for managing the partitioning of a matrix or graph

667:    Level: beginner

669:   Concepts: partitioning

671: .seealso:  MatParitioningCreate(), MatPartitioningType
672: S*/
673: typedef struct _p_MatPartitioning *MatPartitioning;

675: /*E
676:     MatPartitioningType - String with the name of a PETSc matrix partitioing or the creation function
677:        with an optional dynamic library name, for example 
678:        http://www.mcs.anl.gov/petsc/lib.a:partitioningcreate()

680:    Level: beginner

682: .seealso: MatPartitioingCreate(), MatPartitioning
683: E*/
684: typedef char* MatPartitioningType;
685: #define MAT_PARTITIONING_CURRENT  "current"
686: #define MAT_PARTITIONING_PARMETIS "parmetis"

688: EXTERN int MatPartitioningCreate(MPI_Comm,MatPartitioning*);
689: EXTERN int MatPartitioningSetType(MatPartitioning,MatPartitioningType);
690: EXTERN int MatPartitioningSetAdjacency(MatPartitioning,Mat);
691: EXTERN int MatPartitioningSetVertexWeights(MatPartitioning,int*);
692: EXTERN int MatPartitioningApply(MatPartitioning,IS*);
693: EXTERN int MatPartitioningDestroy(MatPartitioning);

695: EXTERN int MatPartitioningRegister(char*,char*,char*,int(*)(MatPartitioning));
696: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
697: #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,0)
698: #else
699: #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,d)
700: #endif

702: EXTERN int        MatPartitioningRegisterAll(char *);
703: extern PetscTruth MatPartitioningRegisterAllCalled;
704: EXTERN int        MatPartitioningRegisterDestroy(void);

706: EXTERN int MatPartitioningView(MatPartitioning,PetscViewer);
707: EXTERN int MatPartitioningSetFromOptions(MatPartitioning);
708: EXTERN int MatPartitioningGetType(MatPartitioning,MatPartitioningType*);

710: EXTERN int MatPartitioningParmetisSetCoarseSequential(MatPartitioning);

712: /*
713:     If you add entries here you must also add them to finclude/petscmat.h
714: */
715: typedef enum { MATOP_SET_VALUES=0,
716:                MATOP_GET_ROW=1,
717:                MATOP_RESTORE_ROW=2,
718:                MATOP_MULT=3,
719:                MATOP_MULT_ADD=4,
720:                MATOP_MULT_TRANSPOSE=5,
721:                MATOP_MULT_TRANSPOSE_ADD=6,
722:                MATOP_SOLVE=7,
723:                MATOP_SOLVE_ADD=8,
724:                MATOP_SOLVE_TRANSPOSE=9,
725:                MATOP_SOLVE_TRANSPOSE_ADD=10,
726:                MATOP_LUFACTOR=11,
727:                MATOP_CHOLESKYFACTOR=12,
728:                MATOP_RELAX=13,
729:                MATOP_TRANSPOSE=14,
730:                MATOP_GETINFO=15,
731:                MATOP_EQUAL=16,
732:                MATOP_GET_DIAGONAL=17,
733:                MATOP_DIAGONAL_SCALE=18,
734:                MATOP_NORM=19,
735:                MATOP_ASSEMBLY_BEGIN=20,
736:                MATOP_ASSEMBLY_END=21,
737:                MATOP_COMPRESS=22,
738:                MATOP_SET_OPTION=23,
739:                MATOP_ZERO_ENTRIES=24,
740:                MATOP_ZERO_ROWS=25,
741:                MATOP_LUFACTOR_SYMBOLIC=26,
742:                MATOP_LUFACTOR_NUMERIC=27,
743:                MATOP_CHOLESKY_FACTOR_SYMBOLIC=28,
744:                MATOP_CHOLESKY_FACTOR_NUMERIC=29,
745:                MATOP_SETUP_PREALLOCATION=30,
746:                MATOP_ILUFACTOR_SYMBOLIC=31,
747:                MATOP_ICCFACTOR_SYMBOLIC=32,
748:                MATOP_GET_ARRAY=33,
749:                MATOP_RESTORE_ARRAY=34,
750:                MATOP_DUPLCIATE=35,
751:                MATOP_FORWARD_SOLVE=36,
752:                MATOP_BACKWARD_SOLVE=37,
753:                MATOP_ILUFACTOR=38,
754:                MATOP_ICCFACTOR=39,
755:                MATOP_AXPY=40,
756:                MATOP_GET_SUBMATRICES=41,
757:                MATOP_INCREASE_OVERLAP=42,
758:                MATOP_GET_VALUES=43,
759:                MATOP_COPY=44,
760:                MATOP_PRINT_HELP=45,
761:                MATOP_SCALE=46,
762:                MATOP_SHIFT=47,
763:                MATOP_DIAGONAL_SHIFT=48,
764:                MATOP_ILUDT_FACTOR=49,
765:                MATOP_GET_BLOCK_SIZE=50,
766:                MATOP_GET_ROW_IJ=51,
767:                MATOP_RESTORE_ROW_IJ=52,
768:                MATOP_GET_COLUMN_IJ=53,
769:                MATOP_RESTORE_COLUMN_IJ=54,
770:                MATOP_FDCOLORING_CREATE=55,
771:                MATOP_COLORING_PATCH=56,
772:                MATOP_SET_UNFACTORED=57,
773:                MATOP_PERMUTE=58,
774:                MATOP_SET_VALUES_BLOCKED=59,
775:                MATOP_GET_SUBMATRIX=60,
776:                MATOP_DESTROY=61,
777:                MATOP_VIEW=62,
778:                MATOP_GET_MAPS=63,
779:                MATOP_USE_SCALED_FORM=64,
780:                MATOP_SCALE_SYSTEM=65,
781:                MATOP_UNSCALE_SYSTEM=66,
782:                MATOP_SET_LOCAL_TO_GLOBAL_MAPPING=67,
783:                MATOP_SET_VALUES_LOCAL=68,
784:                MATOP_ZERO_ROWS_LOCAL=69,
785:                MATOP_GET_ROW_MAX=70,
786:                MATOP_CONVERT=71,
787:                MATOP_SET_COLORING=72,
788:                MATOP_SET_VALUES_ADIC=73,
789:                MATOP_SET_VALUES_ADIFOR=74,
790:                MATOP_FD_COLORING_APPLY=75,
791:                MATOP_SET_FROM_OPTIONS=76,
792:                MATOP_MULT_CONSTRAINED=77,
793:                MATOP_MULT_TRANSPOSE_CONSTRAINED=78,
794:                MATOP_ILU_FACTOR_SYMBOLIC_CONSTRAINED=79,
795:                MATOP_PERMUTE_SPARSIFY=80,
796:                MATOP_MULT_MULTIPLE=81,
797:                MATOP_SOLVE_MULTIPLE=82
798:              } MatOperation;
799: EXTERN int MatHasOperation(Mat,MatOperation,PetscTruth*);
800: EXTERN int MatShellSetOperation(Mat,MatOperation,void(*)(void));
801: EXTERN int MatShellGetOperation(Mat,MatOperation,void(**)(void));
802: EXTERN int MatShellSetContext(Mat,void*);

804: /*
805:    Codes for matrices stored on disk. By default they are
806:  stored in a universal format. By changing the format with 
807:  PetscViewerSetFormat(viewer,PETSC_VIEWER_BINARY_NATIVE); the matrices will
808:  be stored in a way natural for the matrix, for example dense matrices
809:  would be stored as dense. Matrices stored this way may only be
810:  read into matrices of the same time.
811: */
812: #define MATRIX_BINARY_FORMAT_DENSE -1

814: /*
815:      New matrix classes not yet distributed 
816: */
817: /*
818:     MatAIJIndices is a data structure for storing the nonzero location information
819:   for sparse matrices. Several matrices with identical nonzero structure can share
820:   the same MatAIJIndices.
821: */
822: typedef struct _p_MatAIJIndices* MatAIJIndices;

824: EXTERN int MatCreateAIJIndices(int,int,int*,int*,PetscTruth,MatAIJIndices*);
825: EXTERN int MatCreateAIJIndicesEmpty(int,int,int*,PetscTruth,MatAIJIndices*);
826: EXTERN int MatAttachAIJIndices(MatAIJIndices,MatAIJIndices*);
827: EXTERN int MatDestroyAIJIndices(MatAIJIndices);
828: EXTERN int MatCopyAIJIndices(MatAIJIndices,MatAIJIndices*);
829: EXTERN int MatValidateAIJIndices(int,MatAIJIndices);
830: EXTERN int MatShiftAIJIndices(MatAIJIndices);
831: EXTERN int MatShrinkAIJIndices(MatAIJIndices);
832: EXTERN int MatTransposeAIJIndices(MatAIJIndices,MatAIJIndices*);

834: EXTERN int MatCreateSeqCSN(MPI_Comm,int,int,int*,int,Mat*);
835: EXTERN int MatCreateSeqCSN_Single(MPI_Comm,int,int,int*,int,Mat*);
836: EXTERN int MatCreateSeqCSNWithPrecision(MPI_Comm,int,int,int*,int,PetscScalarPrecision,Mat*);

838: EXTERN int MatCreateSeqCSNIndices(MPI_Comm,MatAIJIndices,int,Mat *);
839: EXTERN int MatCreateSeqCSNIndices_Single(MPI_Comm,MatAIJIndices,int,Mat *);
840: EXTERN int MatCreateSeqCSNIndicesWithPrecision(MPI_Comm,MatAIJIndices,int,PetscScalarPrecision,Mat *);

842: EXTERN int MatMPIBAIJSetHashTableFactor(Mat,PetscReal);
843: EXTERN int MatSeqAIJGetInodeSizes(Mat,int *,int *[],int *);
844: EXTERN int MatMPIRowbsGetColor(Mat,ISColoring *);

846: /*S
847:      MatNullSpace - Object that removes a null space from a vector, i.e.
848:          orthogonalizes the vector to a subsapce

850:    Level: advanced

852:   Concepts: matrix; linear operator, null space

854:   Users manual sections:
855: .   Section 4.15 Solving Singular Systems

857: .seealso:  MatNullSpaceCreate()
858: S*/
859: typedef struct _p_MatNullSpace* MatNullSpace;

861: EXTERN int MatNullSpaceCreate(MPI_Comm,int,int,Vec *,MatNullSpace*);
862: EXTERN int MatNullSpaceDestroy(MatNullSpace);
863: EXTERN int MatNullSpaceRemove(MatNullSpace,Vec,Vec*);
864: EXTERN int MatNullSpaceAttach(Mat,MatNullSpace);
865: EXTERN int MatNullSpaceTest(MatNullSpace,Mat);

867: EXTERN int MatReorderingSeqSBAIJ(Mat A,IS isp);
868: EXTERN int MatMPISBAIJSetHashTableFactor(Mat,PetscReal);
869: EXTERN int MatSeqSBAIJSetColumnIndices(Mat,int *);


872: EXTERN int MatCreateMAIJ(Mat,int,Mat*);
873: EXTERN int MatMAIJRedimension(Mat,int,Mat*);
874: EXTERN int MatMAIJGetAIJ(Mat,Mat*);

876: EXTERN int MatMPIAdjSetValues(Mat,int*,int*,int*);

878: EXTERN int MatComputeExplicitOperator(Mat,Mat*);

880: EXTERN int MatESISetType(Mat,char*);
881: EXTERN int MatESISetFromOptions(Mat);

883: EXTERN int MatDiagonalScaleLocal(Mat,Vec);

885: EXTERN int PetscViewerMathematicaPutMatrix(PetscViewer, int, int, PetscReal *);
886: EXTERN int PetscViewerMathematicaPutCSRMatrix(PetscViewer, int, int, int *, int *, PetscReal *);

888: EXTERN int MatUseSuperLU_DIST_MPIAIJ(Mat);
889: EXTERN int MatUseSpooles_SeqAIJ(Mat);
890: EXTERN int MatUseUMFPACK_SeqAIJ(Mat);
891: EXTERN int MatUseSuperLU_SeqAIJ(Mat);
892: EXTERN int MatUseEssl_SeqAIJ(Mat);
893: EXTERN int MatUseLUSOL_SeqAIJ(Mat);
894: EXTERN int MatUseMatlab_SeqAIJ(Mat);
895: EXTERN int MatUseDXML_SeqAIJ(Mat);
896: EXTERN int MatUseSuperLU_DIST_MPIAIJ(Mat);
897: EXTERN int MatUseSpooles_MPIAIJ(Mat);
898: EXTERN int MatUseSpooles_SeqSBAIJ(Mat);
899: extern int MatUseSpooles_MPISBAIJ(Mat);

901: #endif