siRNA at MIT: Sort by Gene

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siRNAs/shRNAs sorted by gene name

by gene name human reactive mouse reactive

For more specific information on each siRNA, click the siRNA ID.
For the NCBI Probe's page of each siRNA, click the NCBI Probe #.

Target Gene	ID#	siRNA	shRNA	Mouse	Human	NCBI Probe #	mRNA knockdown	Protein knockdown
ABCB1	1053	x			x	8809956	80-90%	---
ABCC1	1106	x			x	8809962	70-80%	---
ADAM8	1085	x			x	8809972	70-80%	---
AKT1	1107		x		x	N/A*	50-85%	---
AKT2	1047	x			x	8809979	80-90%	---
AKT3	1097	x			x	8809982	70-80%	---
AKT3	1098	x			x	8809981	70-80%	---
ANP32A	1103	x			x	8809983	70-80%	---
ANXA8	1108		x		x	N/A*	80-95%	---
ARD1A	1049	x			x	8809987	80-90%	---
ARHGDIB	1066	x			x	8809991	80-90%	---
ARHGDIB	1026	x			x	8809992	90-100%	---
ARHGEF12	1067	x			x	8809990	80-90%	---
ARHGEF12	1093	x			x	8809989	70-80%	---
ASNS	1060	x			x	8809995	80-90%	---
ASNS	1082	x			x	8809996	70-80%	---
BAD	1034	x			x	8810001	80-90%	---
BAG1	1092	x			x	8810004	70-80%	---
BAG3	1046	x			x	8810008	80-90%	---
BAG3	1052	x			x	8810007	80-90%	---
BAG4	1044	x			x	8810010	80-90%	---
BAG4	1065	x			x	8810009	80-90%	---
BRMS1	1064	x			x	8810027	70-80%	---
BRMS1	1051	x			x	8810028	80-90%	---
BUB1B	1109		x		x	N/A*	25-85%	---
CAPZB	1110		x		x	N/A*	75-95%	---
CAV1	1059	x			x	8810029	80-90%	---
CAV1	1069	x			x	8810030	70-80%	---
CCND1	1079	x			x	8810034	70-80%	---
CCNE1	1111		x		x	N/A*	60-80%	---
CD44v6	1003	x			x	in preparation	yes	---
CD44v6	1002	x			x	in preparation	80-90%	---
CD82/KAI1	1024	x			x	8810130	90-100%	---
CD82/KAI1	1031	x			x	8810129	80-90%	---
CDH1	1050	x			x	8810037	80-90%	60-70%
CDK2	1112		x		x	N/A*	80-90%	---
CDK4	1078	x			x	8810040	70-80%	---
CDK4	1081	x			x	8810039	70-80%	---
CDKN1C	1113		x		x	N/A*	70-85%	---
CDKN2B	1114		x		x	N/A*	70-85%	---
CDKN2C	1115		x		x	N/A*	80-90%	---
CSK	1116		x		x	N/A*	70-85%	---
CSNK1E	1117		x		x	N/A*	60-85%	---
CTNNB1	1043	x			x	8810050	80-90%	60-70%
CTNNB1	1048	x			x	8810049	80-90%	70-80%
CTNNB1	1118		x		x	N/A*	80-95%	---
CUL2	1075	x			x	8810054	70-80%	---
CXCR4	1000	x			x	8694722	---	90-100%
DAL-1/4.1B	1016		x		x	in preparation	80-90%	---
DAL-1/4.1B	1014		x		x	in preparation	90-100%	---
DAL-1/4.1B	1013		x		x	in preparation	90-100%	---
DAL-1/4.1B	1015		x		x	in preparation	80-90%	---
DAPK1	1119		x		x	N/A*	75-90%	---
DDR1	1120		x		x	N/A*	75-85%	---
DDR2	1121		x		x	N/A*	75-85%	---
DEK	1122		x		x	N/A*	90-100%	---
DGCR8	1017		x	x		in preparation	80%	---
Dicer1	1019		x	x		in preparation	80%	---
Drosha	1018		x	x		in preparation	80%	---
E2F1	1123		x		x	N/A*	80-90%	---
EGFP	1004	x			x	8808666	---	90-100%
EGFR	1084	x			x	8810069	70-80%	70-80%
EGFR	1091	x			x	8810070	70-80%	80-90%
EPHA2	1124		x		x	N/A*	85-95%	---
FER	1125		x		x	N/A*	70-95%	---
FES	1126		x		x	N/A*	70-85%	---
FGFR1	1042	x			x	8810082	80-90%	---
FH	1063	x			x	8810084	80-90%	---
FH	1039	x			x	8810083	80-90%	---
FMR1	1074	x			x	8810086	70-80%	---
FYN	1127		x		x	N/A*	85-90%	---
GIPC1	1058	x			x	8810094	80-90%	---
GIPC1	1090	x			x	8810093	70-80%	---
GL3	1008	x			x	8808665	---	90-100%
GSK3B	1089	x			x	8810099	70-80%	80-90%
GSK3B	1086	x			x	8810100	70-80%	70-80%
H2AFZ	1128		x		x	N/A*	85-100%	---
HDAC1	1102	x			x	8810101	70-80%	---
HIF1A	1057	x			x	8810110	80-90%	---
HPRT1	1045	x			x	8810111	80-90%	---
HSP90A	1025	x			x	8810114	90-100%	---
HSP90A	1028	x			x	8810113	80-90%	---
IGF2R	1038	x			x	8810118	80-90%	---
IGF2R	1068	x			x	8810117	70-80%	---
ITGB1	1056	x			x	8810127	80-90%	---
ITGB1	1023	x			x	8810128	90-100%	---
K-RAS	1096	x			x	8810134	70-80%	---
K-RAS	1105	x			x	8810133	70-80%	---
KISS1	1041	x			x	8810131	80-90%	---
MAP2K1	1073	x			x	8810136	70-80%	80-90%
MAP2K1	1088	x			x	8810135	70-80%	60-70%
MAPK11	1129		x		x	N/A*	35-85%	---
MAPK14	1083	x			x	8810141	70-80%	---
MAX	1130		x		x	N/A*	85-100%	---
MDM2	1131		x		x	N/A*	50-95%	---
MET	1072	x			x	8810143	70-80%	90-100%
MET	1132		x		x	N/A*	80-90%	---
MLH1	1133		x		x	N/A*	70-95%	---
MMP1	1055	x			x	8810146	80-90%	---
MMP11	1134		x		x	N/A*	80-85%	---
MSH2	1135		x		x	N/A*	80-100%	---
NME1	1071	x			x	8810149	70-80%	---
NME2	1033	x			x	8810154	80-90%	---
NME2	1037	x			x	8810153	80-90%	---
P53	1099	x			x	8810210	70-80%	80-90%
PAK4	1136		x		x	N/A*	80-95%	---
PIK3C2A	1036	x			x	8810157	80-90%	---
PIK3CA	1137		x		x	N/A*	55-90%	---
PLK1	1032	x			x	8810161	80-90%	---
PLK1	1030	x			x	8810162	80-90%	---
PMS2	1138		x		x	N/A*	60-85%	---
PTK2B	1139		x		x	N/A*	70-90%	---
RAF1	1140		x		x	N/A*	70-95%	---
RB1	1035	x			x	8810167	80-90%	70-80%
RB1	1040	x			x	8810168	80-90%	70-80%
RBX1	1054	x			x	8810169	80-90%	---
RHA	1005	x			x	8808662	80-90%	---
RHOA	1027	x			x	8810171	90-100%	---
RHOA	1029	x			x	8810172	80-90%	---
RHOC	1101	x			x	8810174	70-80%	---
SCRIB	1141		x		x	N/A*	70-85%	---
SFN	1087	x			x	8810181	70-80%	---
SFN	1100	x			x	8810182	70-80%	---
siRL3	1001	x			x	8694723	---	80-90%
SMAD2	1070	x			x	8810188	70-80%	---
SOS1	1062	x			x	8810193	70-80%	---
SRC	1104	x			x	8810196	70-80%	---
STAT1	1077	x			x	8810197	70-80%	---
STAT1	1095	x			x	8810198	70-80%	---
STAT3	1076	x			x	8810200	70-80%	---
STK6	1142		x		x	N/A*	55-95%	---
TFE3	1143		x		x	N/A*	55-95%	---
TGFB2	1144		x		x	N/A*	70-85%	---
TNFRSF12A	1145		x		x	N/A*	75-85%	---
TOP1	1080	x			x	8810206	70-80%	---
TOP1	1094	x			x	8810205	70-80%	---
TP53	1146		x		x	N/A*	70-95%	---
TYRO3	1147		x		x	N/A*	65-90%	---
VEGF-A	1012		x		x	in preparation	70-80%	---
VEGF-A	1011		x		x	in preparation	60-70%	---
VEGF-C	1010		x		x	in preparation	80-90%	---
VEGF-C	1009		x		x	in preparation	80-90%	---
VIL2	1061	x			x	8810219	70-80%	---
WNT10B	1148		x		x	N/A*	85-95%	---
XRN-1 beta	1006	x			x	8808663	90-100%	---
XRN-1 delta	1007	x			x	8808664	90-100%	---
YWHAZ	1022	x			x	8810223	90-100%	70-80%

*Sequences provided by the ICBP/CGAP shRNA Validation Project do not have corresponding entries in the Probes Database. Further information on these sequences can be found at http://cgap.nci.nih.gov/RNAi/shRNAValidation. (Return)

Last updated January 9th, 2009

siRNAs/shRNAs sorted by gene name

Target Gene

ID#

Mouse

Human

NCBI Probe #

mRNA knockdown

Protein knockdown